Pairwise Alignments

Query, 481 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 502 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  175 bits (443), Expect = 4e-48
 Identities = 142/483 (29%), Positives = 237/483 (49%), Gaps = 28/483 (5%)

Query: 10  TGIDGLDALLKGGLIAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLVATLLSESHER 69
           TG++GLD +L GGL     ++++G PG+GKT +A Q        G R L  TL SE+ E 
Sbjct: 11  TGVEGLDDILSGGLSRRHVFLLEGAPGSGKTTIALQFLLEGATIGERCLYITL-SETEEE 69

Query: 70  LFQYLST--LDFFDPALVGDKIQFVSAFDTLEQDGL--------DAVVRLLRQEIARQQA 119
           L    S+   D  D   + + +   S  D  +Q  L            +L+ +   R + 
Sbjct: 70  LRDSASSHGKDIGDQVEIFELVPPESLLDADQQQSLLYSSDLELGETTKLIFEAFERVKP 129

Query: 120 SLLIVDGVLNARVRAETALDTKKFVSELQGHAAFAGCTVLLL---TSARLDEGSPEHTMV 176
             +++D +   R+ A+++L  ++ +  L+   + +  TVLLL   TS  +D+    H++V
Sbjct: 130 HRVVIDSLSEIRLLAQSSLRYRRQILALKHFFSRSDATVLLLDDMTSDAMDK--TVHSVV 187

Query: 177 DGVIELGEQLV---GSRAVRHVQLRKTRGSGALSGRHECLIDESGMQVYPRLEALFSHPS 233
            GVI L EQL    GS   R +++ K RG     G H+  I   G++V+PRL AL    +
Sbjct: 188 HGVIHL-EQLAPDYGSER-RRLRVLKYRGQAFRGGYHDFTIKTGGVEVFPRLRALEHRVA 245

Query: 234 QLGSGTLARISSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGLAFLGASTPQAP-GL 292
                TL  ++SG+  FD++LGGG+A GS +LL+GP+G GK+   L F+ A+  +     
Sbjct: 246 F--ERTL--VASGISEFDDLLGGGVARGSSTLLIGPAGTGKSLFALQFVEAAVSRGERAA 301

Query: 293 HFGFYETPERLRSKAASLGYDFAAMEKGGSLQLCWQPTTEGLLDQVGARLLERVAAQGSK 352
            F F E    L  +   +G D  AM     L +      E    +   R+ ++VA+  +K
Sbjct: 302 IFVFDEELGLLFDRTKEMGLDLEAMRDKNLLHIEQLDAAELSPGEFSQRVRDKVASFDAK 361

Query: 353 RVVIDSLGAFSRLAIDPTRLNAFFRALAGELRARDVSVMLTWEMRDIFGAEISAPAPDLS 412
            VVIDS+  +     +   L      L   L  +  +  +T     + G ++ +P  D++
Sbjct: 362 TVVIDSINGYQAAMPEENALILHMHELLQYLNRQGANTFITVAQHGLVG-DMKSPV-DVT 419

Query: 413 SIVDNLMLMRFVELDSQLRRMLSVLKVRDSHHDPALHELLIVPQGITLRKAFEGACGVLS 472
            + D ++L+R+ E ++++RR +SV+K R   H+  + E  I   G+TL +      G+L 
Sbjct: 420 YLADTVILLRYFEAEARVRRAISVIKKRTGRHEDTIREYKIGANGLTLGEPLSAFQGILR 479

Query: 473 GTP 475
           G P
Sbjct: 480 GVP 482



 Score = 58.2 bits (139), Expect = 7e-13
 Identities = 66/238 (27%), Positives = 94/238 (39%), Gaps = 29/238 (12%)

Query: 239 TLARISSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGLAF-LGASTPQAPGLHFGFY 297
           ++A+  +GV   D++L GGL+   V LL G  G GKT++ L F L  +T     L+    
Sbjct: 5   SVAKAKTGVEGLDDILSGGLSRRHVFLLEGAPGSGKTTIALQFLLEGATIGERCLYITLS 64

Query: 298 ETPERLRSKAASLGYDFAAMEKGGSLQLCWQPTTEGLLD----------------QVGAR 341
           ET E LR  A+S G D      G  +++      E LLD                +    
Sbjct: 65  ETEEELRDSASSHGKDI-----GDQVEIFELVPPESLLDADQQQSLLYSSDLELGETTKL 119

Query: 342 LLERVAAQGSKRVVIDSLGAFSRLAIDPTRLNAFFRALAGELRARDVSVMLTWEMRDIFG 401
           + E        RVVIDSL     LA    R      AL       D +V+L  +M     
Sbjct: 120 IFEAFERVKPHRVVIDSLSEIRLLAQSSLRYRRQILALKHFFSRSDATVLLLDDMTS--- 176

Query: 402 AEISAPAPDLSSIVDNLMLMRFVELD-SQLRRMLSVLKVRDSHHDPALHELLIVPQGI 458
               A    + S+V  ++ +  +  D    RR L VLK R        H+  I   G+
Sbjct: 177 ---DAMDKTVHSVVHGVIHLEQLAPDYGSERRRLRVLKYRGQAFRGGYHDFTIKTGGV 231



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 8   LVTGIDGLDALLKGGLIAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLVATLLSESH 67
           + +GI   D LL GG+  G+S ++ GP G GK++ A Q     V  G R  +  +  E  
Sbjct: 251 VASGISEFDDLLGGGVARGSSTLLIGPAGTGKSLFALQFVEAAVSRGERAAI-FVFDEEL 309

Query: 68  ERLFQYLSTLDFFDPALVGDKIQFVSAFDTLEQDGLDAVVRLLRQEIARQQASLLIVDGV 127
             LF     +     A+    +  +   D  E    +   R +R ++A   A  +++D +
Sbjct: 310 GLLFDRTKEMGLDLEAMRDKNLLHIEQLDAAELSPGEFSQR-VRDKVASFDAKTVVIDSI 368