Pairwise Alignments

Query, 304 a.a., putative permease (RarD protein) from Pseudomonas putida KT2440

Subject, 294 a.a., chloramphenical resistance permease RarD from Pseudomonas simiae WCS417

 Score =  122 bits (307), Expect = 8e-33
 Identities = 87/271 (32%), Positives = 146/271 (53%), Gaps = 7/271 (2%)

Query: 11  GLSAALASNCLLGLSSLYWKALAALPALALLGCRVLMSLLCVTLLLAARKE---LVPLLC 67
           G    L++  + GL  LY+KA+A++PA  ++  RVL S L   LLL   K       L  
Sbjct: 9   GYILGLSAYVIWGLFPLYFKAIASVPAAEIIVHRVLWSALFGGLLLMVWKHPGWFRELRD 68

Query: 68  VLKRRDIALHGAAAVLVAGNWGTFIWASIHGHVLESGLGYLIAPVLGISLGLLLYQERLS 127
             KR  +A+   +  L+AGNW T++W+   G +LE+ LGY I P++ + LG+L+  ERL 
Sbjct: 69  NPKR--LAILALSGSLIAGNWLTYVWSVNTGRMLEASLGYYINPLVNVVLGMLILGERLR 126

Query: 128 VPRGLSLTMVIGSVVYLLFEKGGLDSRVFLVIGVTWGTYTWLKKLARLPPWSGLFLESLV 187
             + +++ +    V   +++ G L   V LV+ +T+G Y  ++K A +    GL +E+ +
Sbjct: 127 RLQWVAVGLAAVGVAQQVWQVGSL-PWVSLVLALTFGFYGLIRKQAPVKALPGLVVETWM 185

Query: 188 LGVLLMPLILWVSTPVAGIAALGSADTA-LLLLCGAVSLLPLALFSFAARRLPLSVMGLM 246
           L  + +  +L+  T  +   A  S   A  L+  G V+L+PL  F+ AAR LP + +G +
Sbjct: 186 LVPIAVAWLLFNPTAHSAQMAFWSTSEAWWLVAAGPVTLIPLVCFNAAARHLPYTALGFL 245

Query: 247 QFVLPLTQFFVALMFYGQIPSHGAMLAFALI 277
           Q+V P      A++ +G+  +   + AFA I
Sbjct: 246 QYVAPTLVLLEAVLLFGEHLAPSTLTAFAFI 276