Pairwise Alignments

Query, 304 a.a., putative permease (RarD protein) from Pseudomonas putida KT2440

Subject, 300 a.a., Uncharacterized inner membrane protein RarD from Sphingobium sp. HT1-2

 Score =  152 bits (385), Expect = 7e-42
 Identities = 87/279 (31%), Positives = 160/279 (57%), Gaps = 4/279 (1%)

Query: 7   DAAAGLSAALASNCLLGLSSLYWKALAALPALALLGCRVLMSLLCVTLLLAARKELVPLL 66
           +A  G+ AA+ +  + G+  L+++ L  +  + ++  RV+ S++ + +LLAARK L   +
Sbjct: 7   EARKGVIAAIGTYSIWGMLPLFFRLLHHVDPIEIVTQRVIWSVILILVLLAARKGLAAFV 66

Query: 67  CVLKRRDIALH-GAAAVLVAGNWGTFIWASIHGHVLESGLGYLIAPVLGISLGLLLYQER 125
             L+   + L   A+AV++A NW  ++WA   GHV+   LGY + P++ + LG+++ +ER
Sbjct: 67  AALRTPRLVLPLAASAVMIAINWLVYVWAVNDGHVVACSLGYFLNPLVSVGLGVVILKER 126

Query: 126 LSVPRGLSLTMVIGSVVYLLFEKGGLDSR-VFLVIGVTWGTYTWLKKLARLPPWSGLFLE 184
           L   RG  L + I ++   +     L +  + L + +++  Y  ++KL  + P +GL +E
Sbjct: 127 LR--RGQMLAIAIAAIGVAILAAAALTTLWISLALAISFALYGLIRKLTPVAPMTGLGVE 184

Query: 185 SLVLGVLLMPLILWVSTPVAGIAALGSADTALLLLCGAVSLLPLALFSFAARRLPLSVMG 244
           +L+L    +  ++W++             T LL+L G V+ +PL LF+ AA+RLPL+ +G
Sbjct: 185 TLLLVAPAIGYLIWLAGHGGISFGQDVPTTGLLILAGGVTTVPLVLFATAAQRLPLATLG 244

Query: 245 LMQFVLPLTQFFVALMFYGQIPSHGAMLAFALIALAMLL 283
           L+Q++ P  QF   ++  G+  S G ML+F LI L ++L
Sbjct: 245 LLQYLAPTLQFLCGVVLLGETLSKGQMLSFGLIWLGLIL 283