Pairwise Alignments

Query, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  247 bits (631), Expect = 4e-69
 Identities = 216/768 (28%), Positives = 348/768 (45%), Gaps = 145/768 (18%)

Query: 309  GLLAQAVREGRLLRLEELPEDFYRLSSGLGSGLPRSALLMPATEDGQINGVIELGFLRPL 368
            GL+ +   E R + + + P  + R  +GL S LPR+ L++P    GQ  GVIEL  L+PL
Sbjct: 474  GLVGECALEKREILIADPPPGYVRARTGLLSALPRAVLILPVLSGGQCLGVIELAMLQPL 533

Query: 369  QERDEELLERVGGNLGMSIESARYRQR---------------------LQEVLAETQQLN 407
                  +L+ V   L M +E     +R                     +Q +L+E Q + 
Sbjct: 534  GGTGRRVLDDVLPLLAMRMEILARTERTQQLLAATRELAETLEANQTEIQSLLSEQQAIF 593

Query: 408  EELQVQQEELKTA-----------------NEELEEQSRV-------------LKESQAH 437
            E   V    LK                    E + + +R+               E+ + 
Sbjct: 594  EAATVGIAFLKNRVIVRGNPRLDKLFGYGPGELVGQSTRIWFADDAAFADVGGAYEALSR 653

Query: 438  LETQQAELEQTNEQLSE-----RTEALDRKN---------DELSQAQL--ELQARADDL- 480
             E  Q E E   +  S         A+D  +         ++++QA+   E QARA D  
Sbjct: 654  GEVHQREQEYLRKDQSRFWCRISGSAIDPSDLSRGTVWMLEDVTQARATAEAQARAKDAA 713

Query: 481  QRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQVKFAESIYSAGNDLLN 540
            + +++ KS+FLANMSHE+RTP+N+ + +A L  +    +L   Q  +   I  +G  LL 
Sbjct: 714  EDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKT---DLDPRQKDYVRKIQQSGQHLLG 770

Query: 541  LINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLF 600
            +INDILD +K+EAGKLEV      +++++E +  +    A  KGL     V   VP+ L 
Sbjct: 771  IINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLDLM 830

Query: 601  TDRQRLEQILKNLLSNAIKFTERGQVSMNVSFQADSG----IVFAVRDTGIGIAADQQQA 656
             D  RL Q+L N  +NA+KFTE G++ + V    D G    + F VRDTGIG+  +Q+  
Sbjct: 831  GDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPDVMLRFEVRDTGIGLTDEQKAR 890

Query: 657  IFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSLILPERYAAE 716
            +F +F Q D ++ R++GGTGLGL+IS+ LA L+GG + VDS PGQGS F       + A 
Sbjct: 891  LFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPGQGSTF------WFTAR 944

Query: 717  AEDVEPQSLRPAVDALPPAPQAPLAAAVTRPAPAFADDRERAPFDTRCILVIEDEPNFAR 776
                +P++        P  P+A L                      R +LV++D  N   
Sbjct: 945  LGKGKPRA--------PLIPEAELQG--------------------RRMLVVDDNENARA 976

Query: 777  ILFDLAHELGYSC-LVAHGAD--EGFELAAQYIP-DAILLDMRLPDHSGLTVLQRLKEQA 832
            +L D+   + +    V  GA   +    A   +P D + LD ++PD  GL V +++   +
Sbjct: 977  VLVDMLSAMSFEVDAVDSGAKALDAIRDAVLDLPYDVVFLDWQMPDMDGLEVAEQI--HS 1034

Query: 833  STRHIPVHIISV-----EDRVEAAMHMGAVGYAVKPTSREELKEVFARLEAKLTQK---- 883
                 P H+I V     E+ ++ A         +KP S   L +   R+ A   ++    
Sbjct: 1035 IRLPFPPHLIMVTAYGREEIIKGAQAADIGEVLIKPVSPAALFDSIMRVFASDQRRDEAE 1094

Query: 884  -------LKH-------ILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIY 929
                   + H       +LLVED+DL +E    ++ D  +E+        A+   R  +Y
Sbjct: 1095 DVSEGGSVDHAALRGLKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKARAGVY 1154

Query: 930  DCMIIDLKLPDMLG---NELLKRMTAEDIRAFPPVIVYTGRNLTREEE 974
            D +++D+++P M G      ++R+   D+    P+I  T   +  + +
Sbjct: 1155 DLILMDMQMPVMDGVTATREIRRLGHVDL----PIIAMTANAMQADRD 1198



 Score =  121 bits (304), Expect = 3e-31
 Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 33/280 (11%)

Query: 885  KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNI----YDCMIIDLKLPD 940
            + +L+V+D++  R  +  ++     E+ AV     AL  +R  +    YD + +D ++PD
Sbjct: 963  RRMLVVDDNENARAVLVDMLSAMSFEVDAVDSGAKALDAIRDAVLDLPYDVVFLDWQMPD 1022

Query: 941  MLGNELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR---------- 990
            M G E+ +++ +  +  FPP ++             +  Y R  IIKGA+          
Sbjct: 1023 MDGLEVAEQIHSIRL-PFPPHLIM------------VTAYGREEIIKGAQAADIGEVLIK 1069

Query: 991  --SPERLLDEVTLFLHKVESQLSNERQRMLKTARSRDKVFEGRKVLLVDDDVRNIFALTS 1048
              SP  L D +         Q  +E + + +          G KVLLV+D+  N      
Sbjct: 1070 PVSPAALFDSIMRVF--ASDQRRDEAEDVSEGGSVDHAALRGLKVLLVEDNDLNQEVAGE 1127

Query: 1049 ALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGFEATRLIRQQPRWRKLPI 1108
             L   G  VEI  NG  A+E+       DL+LMD+ MP MDG  ATR IR+      LPI
Sbjct: 1128 ILRDAGIEVEIADNGLIAVEKARA-GVYDLILMDMQMPVMDGVTATREIRRLGHV-DLPI 1185

Query: 1109 IAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVW 1148
            IA+TA AM+ D+ +CL+AG ND++AKPID D +FS I  W
Sbjct: 1186 IAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMFSTISRW 1225



 Score = 43.5 bits (101), Expect = 1e-07
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 12/134 (8%)

Query: 1029 EGRKVLLVDDDVRN---IFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMM 1085
            +GR++L+VDD+      +  + SA+  +   V+ G    +AI         D+V +D  M
Sbjct: 961  QGRRMLVVDDNENARAVLVDMLSAMSFEVDAVDSGAKALDAIRDAVLDLPYDVVFLDWQM 1020

Query: 1086 PEMDGFEATRLIRQQPRWRKLP----IIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRL 1141
            P+MDG E    + +Q    +LP    +I VTA   ++  +    A   + L KP+    L
Sbjct: 1021 PDMDGLE----VAEQIHSIRLPFPPHLIMVTAYGREEIIKGAQAADIGEVLIKPVSPAAL 1076

Query: 1142 F-SLIRVWLPQLER 1154
            F S++RV+     R
Sbjct: 1077 FDSIMRVFASDQRR 1090