Pairwise Alignments

Query, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1329 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  197 bits (500), Expect = 6e-54
 Identities = 148/525 (28%), Positives = 252/525 (48%), Gaps = 73/525 (13%)

Query: 481  QRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQVKFAESIYSAGNDLLN 540
            +++SK KSEFLANMSHE+RTPLN  +    L+ +    +LSE Q ++   +  +GN LLN
Sbjct: 686  EQASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKT---DLSETQAQYLSIVNQSGNALLN 742

Query: 541  LINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLF 600
            +INDILD +K+EAGKLE+  +   +  L E    +       KGL   + + P +P  ++
Sbjct: 743  IINDILDFSKIEAGKLELDIDRCDLYELTEQTSDIITYEVHKKGLEMLLNIHPDIPRFIW 802

Query: 601  TDRQRLEQILKNLLSNAIKFTERGQVSMNV------SFQADSGIVFAVRDTGIGIAADQQ 654
             D  R++QI+ NLL NA KFTE G++ + +          +  I F+VRDTGIGI A++Q
Sbjct: 803  VDSVRVKQIMVNLLGNASKFTEEGEIELQLYPIDKDEASREMVIRFSVRDTGIGIKAEKQ 862

Query: 655  QAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSLILPERYA 714
              IF AF Q D ++ ++YGGTGLGL+IS  L  L+   + + S+ G+GS F   L  +Y 
Sbjct: 863  TKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMHSGLQLHSTVGKGSTFYFDLNVKYE 922

Query: 715  AEAEDVEPQSLRPAVDALPPAPQAPLAAAVTRPAPAFADDRERAPFDTRCILVIEDEPNF 774
                    + L                                       +L+++D  N 
Sbjct: 923  YGERITLEEDL-----------------------------------SVENVLIVDDNDNN 947

Query: 775  ARILFDLAHELGYSCLVAHGADEGFELAAQYIP----DAILLDMRLPDHSGLTVLQRLKE 830
              I+  +    G S      A  GFE   +++     D +L+D  +P  +G+  +++++E
Sbjct: 948  RMIIERMMALRGIS---TSQAKNGFEAIQKFVEGEKFDVVLMDYHMPYMNGIETIRKIRE 1004

Query: 831  QASTRHIP-VHIISVEDRV-EAAMHMGAVGYAVKPTSREELKEVFARLEAK--------- 879
                + I  +H  S +D++ +A   +G     VKP   +E+ +    +  K         
Sbjct: 1005 IVDRQPIIFLHSSSDDDKILKACKELGVRKKLVKPIKLQEMYDALLSINKKQDYRKATDQ 1064

Query: 880  -------LTQKLKHILLVEDDDLQRESIARLIGDDDVEITAV---AMAQDALALLRQNIY 929
                   L      +L+VED+ +    +A+ +  +    TA+   A  ++AL +++  + 
Sbjct: 1065 NIDLPKNLFPNDGKVLIVEDNTINM-LLAKTVIHNLSPATAILEAANGKEALEVMKDELP 1123

Query: 930  DCMIIDLKLPDMLGNELLKRMTAEDIRAFPPVIVYTGRNLTREEE 974
              + +D+++P+M G E  + +  +  +    +I  T  N+  E E
Sbjct: 1124 SVIFMDVQMPEMNGYEATQAIRKKYNKHNILIIALTAGNIKGERE 1168



 Score = 90.5 bits (223), Expect = 8e-22
 Identities = 64/269 (23%), Positives = 138/269 (51%), Gaps = 12/269 (4%)

Query: 884  LKHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALA-LLRQNIYDCMIIDLKLPDML 942
            ++++L+V+D+D  R  I R++    +  +      +A+   +    +D +++D  +P M 
Sbjct: 935  VENVLIVDDNDNNRMIIERMMALRGISTSQAKNGFEAIQKFVEGEKFDVVLMDYHMPYMN 994

Query: 943  GNELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGARSPERLLDEVTLF 1002
            G E ++++  E +   P + +++       ++  +LK  + + ++        L E+   
Sbjct: 995  GIETIRKIR-EIVDRQPIIFLHSS-----SDDDKILKACKELGVRKKLVKPIKLQEMYDA 1048

Query: 1003 LHKVESQLSNERQRMLKTARSRDKVFEGRKVLLVDDDVRNIFALTSALEHKGAIVEI--G 1060
            L  +  +    +         ++      KVL+V+D+  N+    + + +      I   
Sbjct: 1049 LLSINKKQDYRKATDQNIDLPKNLFPNDGKVLIVEDNTINMLLAKTVIHNLSPATAILEA 1108

Query: 1061 RNGREAIERLEQHDDI-DLVLMDVMMPEMDGFEATRLIRQQPRWRKLPIIAVTAKAMKDD 1119
             NG+EA+E ++  D++  ++ MDV MPEM+G+EAT+ IR++     + IIA+TA  +K +
Sbjct: 1109 ANGKEALEVMK--DELPSVIFMDVQMPEMNGYEATQAIRKKYNKHNILIIALTAGNIKGE 1166

Query: 1120 QQRCLQAGANDYLAKPIDLDRLFSLIRVW 1148
            +++C+QAG ND++AKP   + +  L+  W
Sbjct: 1167 REKCMQAGMNDFIAKPFVEEDVIKLMEKW 1195