Pairwise Alignments

Query, 477 a.a., Transcriptional regulator, GntR family from Pseudomonas putida KT2440

Subject, 475 a.a., DNA-binding protein from Pseudomonas simiae WCS417

 Score =  224 bits (571), Expect = 5e-63
 Identities = 150/445 (33%), Positives = 215/445 (48%), Gaps = 29/445 (6%)

Query: 16  QLYQQLRDGIDSGHLAAGSQLPPTRLLAEQLGVSRKTVAEAYSRLTYDNLLSGVVGRGTF 75
           ++Y++ R  ID G L  G ++P  R +A++L V+R TV  AY  L  +         GT 
Sbjct: 9   EIYRRFRQAIDQGQLRPGERVPSVRAMAQELKVARGTVEAAYQLLVSEGFFEARGQAGTV 68

Query: 76  VT---PRHPLRSNESATLPLAGAASLERWQQRATVLSQRQLQAPSRYDFVGGASSKAQFP 132
           +    P+ P++   +A    +G   L+                        G  +   FP
Sbjct: 69  IAEALPQVPMKPMPAALPVTSGPLPLQM-----------------------GLPALDAFP 105

Query: 133 FDQWRSCLNYALRRSQRHPERQFPAQGLPELREAIAHHIAYSRGVHCSAADLLVCNGAQQ 192
              W   +   +RR+  +       +G   LR AIA ++A  RGV C+   + VC G   
Sbjct: 106 RKLWARLVTQQVRRTDANSLAMGDERGTQALRVAIASYLALYRGVECTPQQVFVCAGYAG 165

Query: 193 ALDLIARVLVEPGCQVAMEDPGYPPARQLFLALGARLQSVPVDDEGLCVEQ-IADG--TR 249
            L L+   L   G +   EDPGY  ARQL +  G  L  VPVD +GL VEQ I+ G   R
Sbjct: 166 GLTLVCEALAMAGQRCWFEDPGYLHARQLLIHQGVELVPVPVDRDGLDVEQGISRGREAR 225

Query: 250 LIYVTPSHQFPLGMPMSEPRRHALLARAAELGALIIEDDYDCEFRYHGPASDALQRLDRH 309
           L  VTP+HQ PLG+ +S  RR ALLA A E G+ ++EDDYD EFRY G    AL+R D  
Sbjct: 226 LAVVTPAHQSPLGVALSPARRRALLAWAREQGSWVVEDDYDSEFRYRGQPLAALKRQDGD 285

Query: 310 GLVAYVGTFSKTLLPELRLGYAVLPPAVLQAACVAKHLSDWHSPTLLQWALARFLGEGHL 369
             V Y G+FSK L P LRLGY V+P A+L        +    S  LLQ   A FL +GH 
Sbjct: 286 DRVIYAGSFSKMLFPGLRLGYLVVPTALLARFEQGARVLQQRSAQLLQLTAADFLEQGHF 345

Query: 370 NKHIRRCHEVYSARRERILARLGGDLAPWFSAIPASAGFHLSALATPGVDVELLANLARK 429
            +H+++  ++Y+ RR  ++  L      +      + G +L A     V    +A  A +
Sbjct: 346 TRHLKKMRQLYAQRRGYLVEALRLHCGAFLRVDEQAGGINLLARLVVDVPDWAVAEAAER 405

Query: 430 VEVGLYSLAPFFSEAPVRPGLLMGF 454
             +G+ +L+ +  E     G+LMGF
Sbjct: 406 AGLGVKALSAWTLEGGQGQGVLMGF 430