Pairwise Alignments

Query, 631 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

Subject, 657 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

 Score =  472 bits (1215), Expect = e-137
 Identities = 256/607 (42%), Positives = 361/607 (59%), Gaps = 21/607 (3%)

Query: 19  RRLLACAAMVFSLCAVLVGRLYVLQVLQHDQQTAVSENNRVHVLPIAPERGLIYDRNGVV 78
           RR++     V     +L  RL  LQV +H+     +E+NR  V+P+ P RGLI DRNG+V
Sbjct: 16  RRVIVIGLAVLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVPVVPNRGLILDRNGIV 75

Query: 79  LADNKPSFDLTMTRERAGGDSAKVLDTLTQVLGLTEDDRKQFDKDLRRGRKPFEPVTLMV 138
           LA N  ++ L +T  + G D  + +D+LTQVL ++  DR++F K LR   + F+ + +  
Sbjct: 76  LASNYSAYTLEITPSKVG-DVEETIDSLTQVLEISPRDRRRF-KRLREDSRSFDSIPIRT 133

Query: 139 GLSEEQIALVAVNQFRLPGLEVEPQFIREYPLAGHFAHSVGYVGRINEKEAKTLDSTE-- 196
            LS+E++A  A  ++R PG+E++ +  R YP     +H +GY+GRIN++E   ++  +  
Sbjct: 134 RLSDEEVARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRINQREKTAMEDWDEE 193

Query: 197 ----YRGTQSIGKTGIERFYESQLHGHVGYEEVETNAQGRVMRVLNHKDPTPGQDIVLTL 252
               Y+GT  IGK GIE+ YE  LHG  G E++ET+A GR +R L     TPG  ++L+L
Sbjct: 194 EQANYKGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLASHPATPGNTVMLSL 253

Query: 253 DAHLQIAAEKALGDRRGSVVVLDPANGDVLAMVSNPSFDPNLFVKGISFKQYAALRDSID 312
           D  LQ   E   GDRRG+VV +DP  G+VLA VS P+FDPNLFV+GI  + +AAL +SID
Sbjct: 254 DIKLQKLVEDMFGDRRGAVVAIDPKTGEVLAFVSKPTFDPNLFVEGIDNESWAALTESID 313

Query: 313 RPLFNRVLRGLYAPGSTVKPEVAIAGLDSGVITPGSRVFDPGYYELPNYDHKYRNWNRSG 372
           +PL NR LRG Y PGST KP +A+A L +G   P   V DPGY+    +       N  G
Sbjct: 314 KPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVNDPGYFNFGGHRFGSPEGNLGG 373

Query: 373 DGWVDMYTAIMRSNDTYFYDLAHKLGIDRLHDYMAEFGLGQKVSLDMFEEASGLMPSAEW 432
              VDM  AI  S++ YFY LA+++G+D +HD M   G GQ   +D+  E  G++PS EW
Sbjct: 374 ---VDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGGEVRGVLPSTEW 430

Query: 433 KRATRR----QAWFPGETLILGIGQGYMQVTPLQLAQATSLLASKGVWHRPHLAM----T 484
           KR   +    + W+ GET+ LGIGQGY   T LQLAQAT+++A  G+ H+PHL +    T
Sbjct: 431 KRNAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIVADGGLKHKPHLVLATRNT 490

Query: 485 VGGDTPIDPNPMPDIVLHDKHAWDQVSQGMQMVMHDPRGIARAAAAGAQYRIAGKSGTAQ 544
           V G     P P  + + +   A   + +G+  V+    G AR   AGA Y+ AGK+GTAQ
Sbjct: 491 VSGQVVPMPQPPAENLGYTASAISVIREGLTSVV--TSGTARGVFAGAAYQAAGKTGTAQ 548

Query: 545 VVAIKQGERYNRNKTLERHRDNALFVGFAPAEHPSVVVAVMIENGEAGGRVAGPVVREVM 604
            V   Q  +YN     E  RD+ALF+GFAP   P + +AV++EN   G   A P+ R V 
Sbjct: 549 AVTQAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVENAGWGAGAAAPIARRVF 608

Query: 605 DAYLLDE 611
           D +L D+
Sbjct: 609 DYWLADQ 615