Pairwise Alignments

Query, 631 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

Subject, 631 a.a., peptidoglycan DD-transpeptidase MrdA from Serratia liquefaciens MT49

 Score =  484 bits (1247), Expect = e-141
 Identities = 260/622 (41%), Positives = 374/622 (60%), Gaps = 13/622 (2%)

Query: 6   PLKDHEKEKHLVNRRLLACAAMVFSLCAVLVGRLYVLQVLQHDQQTAVSENNRVHVLPIA 65
           P +D+  E  L  RR L    ++  L   L+  LY LQ+++ +     S  NR+ ++PIA
Sbjct: 7   PFRDYTAESALFVRRALVAFLVILVLTGTLIANLYNLQIVRFEDYRTRSNENRIKLVPIA 66

Query: 66  PERGLIYDRNGVVLADNKPSFDLTMTRERAGGDSAKVLDTLTQVLGLTEDDRKQFDKDLR 125
           P RG+IYDRNG  LA N+  + L +  E+   D    L  L  V+ LT+DD   F+K+ +
Sbjct: 67  PSRGIIYDRNGTPLALNRTIYQLELMPEKVD-DLKATLQALRSVVDLTDDDITNFEKERK 125

Query: 126 RGRKPFEPVTLMVGLSEEQIALVAVNQFRLPGLEVEPQFIREYPLAGHFAHSVGYVGRIN 185
           R R+ F  + +   LSE Q+A  AVNQFR PG+EV+    R YP      H +GYV +IN
Sbjct: 126 RSRR-FVSIPVKTALSEVQVARFAVNQFRFPGVEVKGYQRRYYPYGSALTHVIGYVSKIN 184

Query: 186 EKEAKTLDS----TEYRGTQSIGKTGIERFYESQLHGHVGYEEVETNAQGRVMRVLNHKD 241
           +++ + LD       Y  T  IGK GIER+YE  LHG  GYEEVE N +GRV+R L+ + 
Sbjct: 185 DRDVERLDKDGKLANYAATHDIGKLGIERYYEETLHGKTGYEEVEVNNRGRVIRQLHEQP 244

Query: 242 PTPGQDIVLTLDAHLQIAAEKALGDRRGSVVVLDPANGDVLAMVSNPSFDPNLFVKGISF 301
           P+ G+D+ LTLD +LQ   E+ L   R +VVV DP  G +LAMVSNPS+DPNLFV GIS 
Sbjct: 245 PSAGKDVYLTLDLNLQRYIEQLLVGSRAAVVVSDPRTGGILAMVSNPSYDPNLFVDGISS 304

Query: 302 KQYAALRDSIDRPLFNRVLRGLYAPGSTVKPEVAIAGLDSGVITPGSRVFDPGYYELPNY 361
           K Y  L +  +RPL NR  +GLY P STVKP ++++ L +GVIT  + VFDPG+++LP  
Sbjct: 305 KDYQGLLNDPNRPLINRATQGLYPPASTVKPYISVSALSAGVITKNTIVFDPGWWQLPGS 364

Query: 362 DHKYRNWNRSGDGWVDMYTAIMRSNDTYFYDLAHKLGIDRLHDYMAEFGLGQKVSLDMFE 421
           + ++R+W + G G +++  A+  S DT+FY +A+ +GIDRL  ++ +FG G+   +D+ E
Sbjct: 365 EKRFRDWKKWGHGRLNVTKALEESADTFFYQVAYDMGIDRLSTWLTKFGYGEYTGIDLSE 424

Query: 422 EASGLMPSAEWKRATRRQAWFPGETLILGIGQGYMQVTPLQLAQATSLLASKGVWHRPHL 481
           E SGLMP+ +WK    ++ W+ G+T+ +GIGQGY   TP+Q+A+A + L + G    PHL
Sbjct: 425 ERSGLMPTRDWKFKRYKKPWYQGDTIPVGIGQGYWTATPIQMAKALTTLINDGNVKTPHL 484

Query: 482 AMTVGGDTPIDPNPMPDIV-LHDKHA--WDQVSQGMQMVMHDPRGIARAAAAGAQYRIAG 538
             +   +  + P    +   + D H+  W+    GM  V + P G AR   AG  Y+ A 
Sbjct: 485 LQSTRINGVLVPFQQEESTQIGDIHSGFWEIAKDGMYGVANRPNGTARKYFAGTPYKAAA 544

Query: 539 KSGTAQVVAIKQGERYNRNKTLERHRDNALFVGFAPAEHPSVVVAVMIENGEAGGRVAGP 598
           KSGTAQV      E YN +K  E  RD+ L   FAP ++P+V VA+++ENG AG  V G 
Sbjct: 545 KSGTAQVFGY---ETYNAHKLAEHLRDHKLMTAFAPFDNPTVSVAIILENGGAGPAV-GT 600

Query: 599 VVREVMDAYLLDEQGHLKPEYA 620
           + R+++D  LL +     P+ A
Sbjct: 601 ITRQILDHILLGDNNTQLPDAA 622