Pairwise Alignments

Query, 631 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

Subject, 636 a.a., peptidoglycan DD-transpeptidase MrdA from Dickeya dianthicola ME23

 Score =  489 bits (1258), Expect = e-142
 Identities = 259/628 (41%), Positives = 381/628 (60%), Gaps = 12/628 (1%)

Query: 6   PLKDHEKEKHLVNRRLLACAAMVFSLCAVLVGRLYVLQVLQHDQQTAVSENNRVHVLPIA 65
           P +D+  E  L  RR L     +  L  +LV  LY LQVL+ D     S  NR+ ++PIA
Sbjct: 7   PFRDYTAEAALFVRRALVAFLGILLLSGILVANLYHLQVLRFDDYRTRSNENRIKLVPIA 66

Query: 66  PERGLIYDRNGVVLADNKPSFDLTMTRERAGGDSAKVLDTLTQVLGLTEDDRKQFDKDLR 125
           P RG+IYDRNG  LA N+  + L +  E+   +  + L  L  ++ LT++D   F K+ +
Sbjct: 67  PSRGIIYDRNGTPLALNRTIYQLELIPEKVN-NLEETLQALKSIIDLTDEDIDNFRKERK 125

Query: 126 RGRKPFEPVTLMVGLSEEQIALVAVNQFRLPGLEVEPQFIREYPLAGHFAHSVGYVGRIN 185
           R R+ F  + +  GL+E Q+A  AVNQ+R PG+EV+    R YP      H +GYV +IN
Sbjct: 126 RSRR-FTSIPVKTGLNEVQVASFAVNQYRFPGVEVKGYQRRYYPYGAALTHVIGYVSKIN 184

Query: 186 EKEAKTLDS----TEYRGTQSIGKTGIERFYESQLHGHVGYEEVETNAQGRVMRVLNHKD 241
           +K+ + LD      +Y  T  IGK GIER+YE  LHG  GYEEVE N +GRV+R L+ + 
Sbjct: 185 DKDLERLDQEGELADYAATHDIGKLGIERYYEDVLHGKPGYEEVEVNNRGRVIRQLHEQP 244

Query: 242 PTPGQDIVLTLDAHLQIAAEKALGDRRGSVVVLDPANGDVLAMVSNPSFDPNLFVKGISF 301
           P  G+DI LTLD +LQ+  EK L   R +VVV DP +  +LAMVS PS+DPNLFV GIS 
Sbjct: 245 PQAGKDITLTLDLNLQLYIEKLLAGSRAAVVVTDPKDASILAMVSTPSYDPNLFVDGISS 304

Query: 302 KQYAALRDSIDRPLFNRVLRGLYAPGSTVKPEVAIAGLDSGVITPGSRVFDPGYYELPNY 361
           K Y AL +  +RPL NR  +G+Y P STVKP +A++ L +GVITP + +FDPG+++LP  
Sbjct: 305 KTYHALLNDPNRPLINRATQGVYPPASTVKPYIAVSALSAGVITPYTSLFDPGWWQLPGS 364

Query: 362 DHKYRNWNRSGDGWVDMYTAIMRSNDTYFYDLAHKLGIDRLHDYMAEFGLGQKVSLDMF- 420
           + ++R+W + G G +++  ++  S DT+FY +++ +GIDRL ++M++FG G +  +D+  
Sbjct: 365 EKRFRDWKKWGHGRLNLTKSLEESADTFFYQVSYDMGIDRLSEWMSKFGYGHRTGIDLSD 424

Query: 421 -EEASGLMPSAEWKRATRRQAWFPGETLILGIGQGYMQVTPLQLAQATSLLASKGVWHRP 479
            EE+ G+MP+ EWK    ++ W+ G+T+ +GIGQGY   TP+Q+ +A + L + G    P
Sbjct: 425 KEESPGIMPTREWKMKRYKKPWYQGDTIPVGIGQGYWTATPIQMLKALTTLINDGQVKAP 484

Query: 480 H-LAMTVGGDTPIDPNPMPDIVLHDKHA--WDQVSQGMQMVMHDPRGIARAAAAGAQYRI 536
           H L+ T   +T +         + D  +  W+ V  GM  V +   G A    A + Y+I
Sbjct: 485 HLLSSTQENNTQVPYRQSEHQQIGDIRSGYWEIVKDGMYGVANRQNGTAHKFFADSSYKI 544

Query: 537 AGKSGTAQVVAIKQGERYNRNKTLERHRDNALFVGFAPAEHPSVVVAVMIENGEAGGRVA 596
           A KSGTAQV  +K+ E YN N+  ER RD+ L V FAP  +P V +++++ENG AG  V 
Sbjct: 545 AAKSGTAQVFGLKENETYNANRIAERLRDHKLMVAFAPYSNPKVAMSIILENGGAGPAV- 603

Query: 597 GPVVREVMDAYLLDEQGHLKPEYAGGAP 624
           G +VR+++D  +L +     P+     P
Sbjct: 604 GTIVRQILDHIMLGDNNTSLPDAPPSPP 631