Pairwise Alignments

Query, 417 a.a., porin-like protein from Pseudomonas putida KT2440

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  305 bits (782), Expect = 1e-87
 Identities = 177/406 (43%), Positives = 239/406 (58%), Gaps = 17/406 (4%)

Query: 27  AQEGGFLEDAKGGLTLRNYYFNRDFRDPGAAKG----KVEEWAQGFIFKFSSGYTPGLIG 82
           AQ  GFLEDA   +  RN YFNRDFRD  ++      K EEWAQGFI    SGYT G +G
Sbjct: 29  AQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSGYTQGPVG 88

Query: 83  FGLDGIALFGVKLDSGGGTSGSELLPV--HDDGRAADDYGRAGLAAKLRMSATELKVGEL 140
            G+D + +FG KLDS    S S LLP   HD  R+AD Y + GLAAK+++S T LK G +
Sbjct: 89  VGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMGLAAKVKVSNTVLKYGSM 148

Query: 141 LPDIPLLRYDDGRLLPQTFRGAMLDSREIEGLSLQAGQYREVSLRHSSDMQDLSAWA--- 197
           +PD+PLL+Y+DGRLLP  F GAML S E+  L     +  + + R S+D QD+       
Sbjct: 149 MPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTDRQDIRVHCKNK 208

Query: 198 --APGVTSDGFNYAGAEYRFNQQRTLIGAWHSQLEDIYQQSYFNLLHSQRVGEWTLGANL 255
             A    +D F+ AG +YRFN +R       ++LE+IY+Q +  L+ SQ +   +L A++
Sbjct: 209 RYACDTEADHFDLAGVDYRFN-ERFSAQYQVAKLENIYRQHFLGLVASQPLPVGSLSADM 267

Query: 256 GYFIDRDDGQARIGDIQSRTGYALLSASHSGHTLYLGLQKVSGDSQWMSVYGSSGRTLGN 315
                 D G AR G+I  R    +L  S  GH L  G Q++ G+S    + GS+   +  
Sbjct: 268 RLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMPYLDGSNPYLVNY 327

Query: 316 DMFNGNFSNADERSWQVRYDYNFAALGVPGLLAMVRYGHGENATTAAGS-NGKEWERDAE 374
              N +F+ A ERSWQVRYDY+F ALGVPGL    RY +G+N      S  GKEWERD E
Sbjct: 328 AQVN-DFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPGSSVEGKEWERDTE 386

Query: 375 VNYTFQSGALKNLNIRLNNATNRRSFN---SDLDQTRLIVSYPLTL 417
             Y  QSG  K++++RL N+T R ++     D+D+TR+IVSY  ++
Sbjct: 387 FKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNFSI 432