Pairwise Alignments

Query, 417 a.a., porin-like protein from Pseudomonas putida KT2440

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  257 bits (656), Expect = 5e-73
 Identities = 151/423 (35%), Positives = 228/423 (53%), Gaps = 25/423 (5%)

Query: 11  SVLAVSLAFGLGLPAWA----QEGGFLEDAKGGLTLRNYYFNRDFRDPGAAKGKVEEWAQ 66
           S++A++++ G    A A    +  GF+ED+K  +  R  YF+RDFR+    + + EE   
Sbjct: 7   SMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGL 66

Query: 67  GFIFKFSSGYTPGLIGFGLDGIALFGVKLDSGGGTSGSELLPVHDDGRAADDYGRAGLAA 126
           GF+  F SG+T G +G G+D I + G+KLDSG G +G+ L P   DGR+ DDY + G A 
Sbjct: 67  GFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAV 126

Query: 127 KLRMSATELKVGELLPDIPLLRYDDGRLLPQTFRGAMLDSREIEGLSLQAGQYREVSLRH 186
           K R+S T LKVG+    +P+   DD RLLP+  +G ++ S EIEGL+L AG +  ++ + 
Sbjct: 127 KFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQE 186

Query: 187 SSDMQDLSAWAAPGVTSDGFNYAGAEYRFNQQRTLIGAWHSQLEDIYQQSYFNLLHSQRV 246
            ++        A        N  G  Y F    +    ++S++ED +++ Y N+  +  +
Sbjct: 187 QTNRDSFGLKEA--------NVVGGTYAFTDNLS-TSLYYSKVEDYWRKYYANVNWALPI 237

Query: 247 GE-WTLGANLGYFIDRDDGQARI----GDIQSRTGYALLSASHSG-HTLYLGLQKVSGDS 300
            +   L  +   +  + +G A      GD      ++L  A + G HT  L  QKV+GD 
Sbjct: 238 SDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDG 297

Query: 301 QW-MSVYGSSGRTLGNDMFNGNFSNADERSWQVRYDYNFAALGVPGLLAMVRYGHGENAT 359
            +   + G     L N +   +F+  DE+SWQ RYD NFA  G+PGL  M RY  G +A 
Sbjct: 298 DYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDAN 357

Query: 360 TAAGSNGKEWERDAEVNYTFQSGALKNLNIRLNNATNRRS-----FNSDLDQTRLIVSYP 414
            A  SNGKEWERD ++ Y  Q G  K+L+ R+  AT R S      +  +D+ RLIV YP
Sbjct: 358 VAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYP 417

Query: 415 LTL 417
           L++
Sbjct: 418 LSI 420