Pairwise Alignments

Query, 236 a.a., L-lysine and D-lysine ABC transporter, permease component 2 (from data) from Pseudomonas putida KT2440

Subject, 241 a.a., ABC transporter, membrane spanning protein (nopaline) from Agrobacterium fabrum C58

 Score =  166 bits (420), Expect = 4e-46
 Identities = 86/231 (37%), Positives = 141/231 (61%), Gaps = 9/231 (3%)

Query: 11  LDPDLLERYGPRFIDGLLVTAKLVAISFSLGAVLGLLLALARLSRSLVLQRMAAGYVYFF 70
           +D  L+    P+ +  +  T  L  IS  +G V+ + +AL RLS++ ++  +A GYVY  
Sbjct: 1   MDIQLIIESFPKLLAAVPTTLTLAFISLLIGFVVSVPVALMRLSKNRIVSSLAYGYVYII 60

Query: 71  RGSPLLAQLFLLYYGLGSLKGFWQDVGLWWFFRDAWFCTLLAFTLNTAAYQAEIFRGSLM 130
           R +PLL Q+FL+YYG    +G   +VGLW  FR+ WFC +LA  LNTAAY +EI RG + 
Sbjct: 61  RSTPLLVQMFLIYYGSAQFRGVLSEVGLWSSFREPWFCAILALALNTAAYTSEIIRGGIQ 120

Query: 131 AVAPGQHEAARALNLKRSTTFFKVILPQSLLVAIGPLGNELILMIKASAIASLVTIYDLM 190
           +V+ GQ EAARA+ +     F +++ P ++  A+   GNE++L+IK++++AS +TI ++ 
Sbjct: 121 SVSLGQIEAARAVGMSTFLQFRRIVFPIAIRQALPAYGNEVMLIIKSTSLASTITIVEVT 180

Query: 191 GVTKLAFSRSFD-FQIYLWAAVLYLVIVELVRRLL--------KHLEARLG 232
           G+ K   S ++   ++++ A  +YL I  +V RL+         H+ AR+G
Sbjct: 181 GLAKQIISATYSPVEVFIVAGAIYLFITFVVSRLVMLAEWWLNPHMRARVG 231