Pairwise Alignments

Query, 239 a.a., L-lysine and D-lysine ABC transporter, permease component 1 (from data) from Pseudomonas putida KT2440

Subject, 231 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  161 bits (407), Expect = 1e-44
 Identities = 95/226 (42%), Positives = 139/226 (61%), Gaps = 3/226 (1%)

Query: 8   LSFASGGWGQALLAGALVTVSLALACLPIGLPLGLVVALAARSRKRLPRAW-ATTFSTVF 66
           ++F   G+G AL AGAL+TV LAL  L +GL LGL  ALA  S  + P  W    +ST+ 
Sbjct: 1   MNFDLYGFGPALAAGALMTVKLALTALCLGLVLGLAGALAKTSPYK-PLQWLGGAYSTIV 59

Query: 67  RGLPELLTLLIIYYGCQIAAQKILAAMGYQGEFLINTFLAAMIAFSLVFAAFSSEIWLAA 126
           RG+PELL +L+IY+G  +   + L       +  ++ F A +IA  L F A+++E++  A
Sbjct: 60  RGIPELLWVLLIYFGT-VNLMRALGEFFGNPDLSLSAFAAGVIALGLCFGAYATEVFRGA 118

Query: 127 FKTLPKGQLEACSALGLSKRTGFFKVLLPQLTRIALPGLSNNWLSLLKDTSLVSTISLVD 186
              +PKG  EA  ALGLSK   F ++++PQ+ RIALPGL N ++ L+KDT+LVS I L +
Sbjct: 119 ILAIPKGHREAGIALGLSKFRIFTRLIMPQMWRIALPGLGNLFMILMKDTALVSVIGLEE 178

Query: 187 LMRQTNLAVSVTKEPMFFYGVACLGYLLFAALSGRVFAYIERRSNR 232
           +MR   + V+VTK+P  F+ VA   YL    L+     ++E+R+ R
Sbjct: 179 IMRHAQIGVTVTKQPFTFFMVAAFMYLGLTVLAMTGMHFLEKRAAR 224