Pairwise Alignments

Query, 239 a.a., L-lysine and D-lysine ABC transporter, permease component 1 (from data) from Pseudomonas putida KT2440

Subject, 221 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  122 bits (306), Expect = 6e-33
 Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 12/215 (5%)

Query: 19  LLAGALVTVSLALACLPIGLPLGLVVALAARSRKRLPRAWATTFSTVFRGLPELLTLLII 78
           LL GA  TV L+L  +  GL LG  +AL   SR +L    A  + + FRG P L+ L +I
Sbjct: 15  LLKGAYYTVILSLGGMFFGLLLGFGLALMRLSRFKLVSWLARVYVSFFRGTPLLVQLFLI 74

Query: 79  YYGCQIAAQKILAAMGYQGEFLINTFLAAMIAFSLVFAAFSSEIWLAAFKTLPKGQLEAC 138
           YYG        L  +G +    ++   AAMI FSL  AA++ EI  AA  ++ +GQ EA 
Sbjct: 75  YYG--------LPQVGIE----LDPIPAAMIGFSLNMAAYACEILRAAIGSIERGQWEAA 122

Query: 139 SALGLSKRTGFFKVLLPQLTRIALPGLSNNWLSLLKDTSLVSTISLVDLMRQTNLAVSVT 198
           +++G+++     + +LPQ  R ALP L N+++SL+KDT+L +TI + +L RQ  L  + T
Sbjct: 123 ASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDTALAATIQVPELFRQAQLVSART 182

Query: 199 KEPMFFYGVACLGYLLFAALSGRVFAYIERRSNRH 233
            E    Y  A L Y + A++   +   +E R NRH
Sbjct: 183 FEIFTMYLSAALIYWILASILAHLQNRLEDRVNRH 217