Pairwise Alignments

Query, 239 a.a., L-lysine and D-lysine ABC transporter, permease component 1 (from data) from Pseudomonas putida KT2440

Subject, 240 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  131 bits (329), Expect = 1e-35
 Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 1/228 (0%)

Query: 5   LSLLSFASGGWGQALLAGALVTVSLALACLPIGLPLGLVVALAARSRKRLPRAWATTFST 64
           L LLS    GWG  LL GA  T++++     IG+ +GL  AL   S  R        ++T
Sbjct: 8   LQLLSPYPPGWGGTLLKGAASTLAISAGAYLIGIVIGLAGALGKLSGNRPLGLLLNLYTT 67

Query: 65  VFRGLPELLTLLIIYYGCQIAAQKILAAMGYQGEFLINTFLAAMIAFSLVFAAFSSEIWL 124
             R +PEL+ ++ +YY       ++L  MG      +N F+AA+     V  A+ +E+  
Sbjct: 68  AIRAVPELILIVGLYYAGTDGLNRLLQLMGLP-PLEVNGFVAAVAVLGFVQGAYMTEVLR 126

Query: 125 AAFKTLPKGQLEACSALGLSKRTGFFKVLLPQLTRIALPGLSNNWLSLLKDTSLVSTISL 184
            A   +P GQ+EA  A G+S    F +V+LP L   ALPGL+N WL++ KD++LV+ +  
Sbjct: 127 GAILAVPNGQIEAARAFGMSPFLRFRRVVLPALLPNALPGLANLWLAVTKDSALVAVVGY 186

Query: 185 VDLMRQTNLAVSVTKEPMFFYGVACLGYLLFAALSGRVFAYIERRSNR 232
            +L   T LA + TK+   F+  A   YL    +S  VF+ +ERR  R
Sbjct: 187 QELALATRLAGASTKQYFLFFLAAAFLYLAITLVSNLVFSQLERRVRR 234