Pairwise Alignments

Query, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

Subject, 258 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  155 bits (392), Expect = 8e-43
 Identities = 94/257 (36%), Positives = 136/257 (52%), Gaps = 7/257 (2%)

Query: 1   MNKSMALLGACALLLAGAASAET---LRFATEGAYPPFNYVDADNKLHGFDVDITHALCE 57
           M    +L  A  L L   A A+    +RF     YPPF  V AD  L GFD+++ +A+C 
Sbjct: 1   MTPLRSLFAALLLPLCATAHAQEWKEIRFGVFPEYPPFESVAADGSLQGFDIELGNAICA 60

Query: 58  QMKVECTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKD 117
           +++V+CT V  +++G+IPAL ARK+DAI++SM  T  R K I F+D  + +P +V   K 
Sbjct: 61  KLEVKCTWVHNEFDGMIPALRARKFDAIMSSMAVTPAREKIIDFSDRLFLSPTSVITRKS 120

Query: 118 SKIDSAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVI 177
           +         +G  VG    S Q  YA     K GA +K Y + D+  ADL  GRLD  +
Sbjct: 121 ADFGDTPESLMGKQVGVLQGSLQEAYARAHLAKLGAQIKAYQSQDQNYADLQNGRLDATL 180

Query: 178 ADKFPLH-EWMNKNGGDCCKILGDVAD--TKADAAIAVRKDDEALRQRLNTALQQIVANG 234
            DK      +++K  G   K      D     D A+ +RK+D+ALR  +N  +  + A+G
Sbjct: 181 TDKLEAQLNFLSKPEGSDFKTGPAFKDPTLPLDIAMGLRKNDQALRALINKGIAAVQADG 240

Query: 235 TYQKIASKYFA-FDIYN 250
           TY +I  KYF   DIY+
Sbjct: 241 TYAQIQKKYFGDQDIYH 257