Pairwise Alignments

Query, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

Subject, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  184 bits (468), Expect = 1e-51
 Identities = 108/257 (42%), Positives = 146/257 (56%), Gaps = 12/257 (4%)

Query: 3   KSMALLGACALL---LAGAASAETLRFATEGAYPPFNYVDADNKLHGFDVDITHALCEQM 59
           K +ALLGA AL    L   A+ + L+   E AYPPF +   D  + GFD DI +ALCE+M
Sbjct: 2   KKLALLGALALSVFSLVSQAAEKPLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCEEM 61

Query: 60  KVECTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDSK 119
           K +CT V Q+++G+IPAL  RK DAI++SM  T++R+K + FT  YY TP  + +   + 
Sbjct: 62  KTKCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDGTT 121

Query: 120 IDSAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVIAD 179
           +  +  +  G  +G Q  S    +A++V G  GA V  Y T +E   D+AAGRLDG +AD
Sbjct: 122 VSDSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTVAD 181

Query: 180 KFPLHEWMNKNGGDCCKILGDVADTKADA-------AIAVRKDDEALRQRLNTALQQIVA 232
              L +   K   D  K    V     DA        IAVRK D+A   R+N A+  I A
Sbjct: 182 ATLLEDGFLKT--DAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIRA 239

Query: 233 NGTYQKIASKYFAFDIY 249
           NG Y++I SKYF FDIY
Sbjct: 240 NGKYKEIESKYFNFDIY 256