Pairwise Alignments

Query, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

Subject, 260 a.a., lysine/arginine/ornithine transporter subunit from Escherichia coli BL21

 Score =  160 bits (406), Expect = 2e-44
 Identities = 92/248 (37%), Positives = 133/248 (53%), Gaps = 5/248 (2%)

Query: 7   LLGACALLLAGAASAETLRFATEGAYPPFNYVDADNKLHGFDVDITHALCEQMKVECTLV 66
           L+G      + AA  ET+R  T+  Y PF+  DA     GFD+D+ + +C++M+V+CT V
Sbjct: 11  LVGLSTAASSYAALPETVRIGTDTTYAPFSSKDAKGDFVGFDIDLGNEMCKRMQVKCTWV 70

Query: 67  AQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDSKIDSAQTD 126
           A D++ +IP+L A+K DAI++S+  T++R+++IAF+D  Y     +  AK S I      
Sbjct: 71  ASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLDS 130

Query: 127 FVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVIADKFPLHEW 186
             G  VG    STQ  YA + +   G DV  Y   D   +DLAAGRLD  + D+    E 
Sbjct: 131 LKGKHVGVLQGSTQEAYANETWRSKGVDVVAYANQDLVYSDLAAGRLDAALQDEVAASEG 190

Query: 187 MNKN--GGDCCKILGDVADTK---ADAAIAVRKDDEALRQRLNTALQQIVANGTYQKIAS 241
             K   G D       V D K       + +RKDD  L    N AL ++  +GTY K+A 
Sbjct: 191 FLKQPAGKDFAFAGSSVKDKKYFGDGTGVGLRKDDAELTAAFNKALGELRQDGTYDKMAK 250

Query: 242 KYFAFDIY 249
           KYF F++Y
Sbjct: 251 KYFDFNVY 258