Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 421 a.a., Efflux pump periplasmic linker BepF from Xanthobacter sp. DMC5

 Score =  181 bits (460), Expect = 3e-50
 Identities = 121/356 (33%), Positives = 182/356 (51%), Gaps = 17/356 (4%)

Query: 50  GMIGGRPGFGGSSDPVPVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFK 109
           G    +P    +   VPV V  V   D  L+    G + A   V VRSRVAG +  +HF+
Sbjct: 53  GAHADKPAAAAAPPAVPVSVATVEQRDARLFDTFSGRLEAVERVEVRSRVAGAIKAVHFR 112

Query: 110 EGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQT 169
           EG  V+ G+LL  IDP PY   + +AE  +A  QA+L  A+ +L R + L+   ++++ T
Sbjct: 113 EGALVREGELLVSIDPEPYEADVAEAEAQVASVQARLDLARNELERGEKLFTTKTLSQST 172

Query: 170 LD-TAEAQVAQFQGLVKTNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAAN-DT 227
           LD     Q A   GL +  QA++  A+LNL +T++RAP+SGRVG  ++ +GNLVAA    
Sbjct: 173 LDERLNGQRAAEAGL-RAAQAKLAAAKLNLSYTKVRAPVSGRVGKSEITVGNLVAAGPGA 231

Query: 228 TALVVITQTEPINVAFTLPETELSTVLERYRSGASLPVEAWDRGDS-----KLQS----- 277
             L  +   +PI  +F+  E  ++  L     G  +     DR D       L S     
Sbjct: 232 PVLTTLVSVDPIYASFSADEATVARALAGLGGGGDVA----DRLDQIPVLMTLASGVPPV 287

Query: 278 TGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFG 337
            GV+  +DNQ+D  TGT++ + RF N D  L P QFV + +        V+    A+   
Sbjct: 288 EGVMQLVDNQVDPRTGTVRVRARFSNPDGRLLPGQFVRLEMGQPKAAPAVLVSERAVGTD 347

Query: 338 NDGTFAYVVNEQSTVNVRKLKVGASDGENSVILDGLKAGDRLVLEGTDRLREGTKV 393
            D  F +VV+  +    R++ +GA      V+ +GL AG+R+V+ G  R+R G  V
Sbjct: 348 QDKKFVFVVDASNKAVWREVTLGAPVDGLRVVTNGLAAGERVVVNGLHRVRPGAAV 403