Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 408 a.a., Efflux pump periplasmic linker BepF from Xanthobacter sp. DMC5

 Score =  175 bits (443), Expect = 3e-48
 Identities = 112/319 (35%), Positives = 169/319 (52%), Gaps = 10/319 (3%)

Query: 84  LGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQNQ 143
           +G   A + VNVR+RV+G L KI F +GQ VK GD+L  ID RP++IA+ QA+  LAQ +
Sbjct: 65  VGRFVAIDEVNVRARVSGYLDKIDFVDGQLVKEGDVLFTIDQRPFKIAVDQAQANLAQAK 124

Query: 144 AQLKNAQVDLARYKGLYAE---DSIAKQTLDTAEAQVAQFQGLVKTNQAQVNDARLNLDF 200
           A L   + DL R + L  +   ++I+KQ  D           +V++ +AQV  A+L+L F
Sbjct: 125 ANLDFTKADLERARTLLEDKTSNAISKQAFDQRTQAERTAAAIVQSQEAQVRSAQLDLGF 184

Query: 201 TQIRAPISGRVGLRQLDLGNLV---AANDTTALVVITQTEPINVAFTLPETELSTVLERY 257
           T+++AP+SG++G R++ +GN V        T L VI  T+PI   FT+ E  L   L R 
Sbjct: 185 TEVKAPVSGQIGDRRVSVGNYVTGGTGGTPTLLAVIVSTDPIRFEFTIDEASLLR-LTRR 243

Query: 258 RSGASL---PVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFV 314
           + G      PV      D      G L  ++N +D  TGT++ +  F+NK     P  F 
Sbjct: 244 KGGTDFKGEPVTLKLIDDKDFVHKGKLDFLNNVVDRETGTIRGRAIFDNKTGLFRPGMFA 303

Query: 315 NVRLLADTLKQVVMAPAAAIQFGNDGTFAYVVNEQSTVNVRKLKVGASDGENSVILDGLK 374
            +RL +    Q ++ P  AI       F YVV   + V+ + + +G   G+  VI +GL 
Sbjct: 304 RIRLQSSDPYQALVVPDVAIGTEQVKKFVYVVGPDNKVSQKFVTLGPLQGDMRVIREGLG 363

Query: 375 AGDRLVLEGTDRLREGTKV 393
             D++V+ G  R+R G  V
Sbjct: 364 PDDKVVVNGLMRVRPGVTV 382