Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 380 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  172 bits (435), Expect = 2e-47
 Identities = 114/344 (33%), Positives = 173/344 (50%), Gaps = 9/344 (2%)

Query: 67  VRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPR 126
           VRV  +      +  +  G + A     VR+RVAG +++  FKEG  VK GD+L  IDP 
Sbjct: 36  VRVETLEAKPLAITSELSGRIAAPRIAEVRARVAGVVMQRVFKEGHDVKQGDVLFRIDPA 95

Query: 127 PYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKT 186
           P++  L  A+  L++ +A    A++   RY  L   ++I+ Q  D A A V Q    V  
Sbjct: 96  PFKADLDSAQANLSKAEADAFKARLQEQRYSQLVEGNAISGQDYDNARAAVRQTNAEVAA 155

Query: 187 NQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLP 246
           N+A V  ARLNL +  + APISGR+G   +  G LV  N+ T L +I Q +PI+   T  
Sbjct: 156 NKAAVERARLNLGYATVTAPISGRIGRALVTEGALVGQNEATPLALIQQLDPIHADLTQS 215

Query: 247 ETELSTVLERYRSGASLPVEAWDRGDSKLQSTGVLGSIDNQ-------IDTTTGTLKFKG 299
             EL+ +   +R+G+   V       + ++  G L  +  +       +D  TG +  + 
Sbjct: 216 TRELNDLRRAFRAGSLKQVGQDQAKATLIEDDGSLYPLPGKLLFAEISVDPGTGQIILRS 275

Query: 300 RFENKDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDG-TFAYVVNEQSTVNVRKLK 358
            F N DL L P  FV VRL     KQ +  P  AI   + G     +++   TV+ + ++
Sbjct: 276 EFPNPDLDLLPGSFVRVRLEQAVDKQGISVPQRAITRDSAGIPMVLLLDAGQTVSQQPVE 335

Query: 359 VGASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVVEDSSQV 402
           +GA   +  ++  GLK GDR+++EG    R G KVE V+DS  V
Sbjct: 336 LGAVINDRWIVSSGLKPGDRIIVEGLQHARPGEKVE-VDDSPLV 378