Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 418 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  206 bits (523), Expect = 1e-57
 Identities = 143/417 (34%), Positives = 216/417 (51%), Gaps = 21/417 (5%)

Query: 18  ILLLVAALAWWLWPAATPAHKEAGGVRGGKGMGMIGGRPGFGGSSDPVPVRVVPVRIGDF 77
           +L++  A  WW   A  PA K A      K  G  GG PG  G+  P  V +   +  D 
Sbjct: 12  VLIVAVAGGWWSMSADKPAAKTA------KAPGAGGGAPGASGA--PALVTLATAQKQDV 63

Query: 78  PLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEG 137
           P+  +  G+V + N+V++R +V   +  +H KEGQ VKAG LL  +D R  +  L +A+ 
Sbjct: 64  PVTVQVNGSVVSLNSVDLRPQVTNTVSAVHVKEGQFVKAGQLLFTLDDRNDQANLARAKA 123

Query: 138 TLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKTNQAQVNDARLN 197
              +++A L + +    R + L A++ IAK   D   +Q+   +  V  ++A V  A++ 
Sbjct: 124 QQQKDEATLADLERQYKRSQDLVAQNFIAKSAADATLSQLEAQRAAVAADRAAVQSAQVA 183

Query: 198 LDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLPETELSTVLERY 257
           L +  +RAPI+GR+G   +  G LV    T +LV +TQ +PI V+F +PE  L  +LE  
Sbjct: 184 LGYATLRAPIAGRIGAVNIYPGTLV--QPTLSLVTVTQLDPIAVSFPVPEGNLQDLLEAS 241

Query: 258 RSGASLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFVNVR 317
           RS +   VEA   G  K    G L  +DN +D   GT++ K  F N D  L+P QFV  R
Sbjct: 242 RSRSK--VEAVVTG-RKEPLAGTLDFVDNTVDPQIGTVRAKAVFANADQGLWPGQFVGTR 298

Query: 318 LLADTLKQVVMAPAAAIQFGNDGTFAYVVNEQSTVNVRKLKVGASDGENSVILDGLKAGD 377
           +   TL+   + PAAA+   +DG   YVV+E  T   RK+K   + G   V + G++ G+
Sbjct: 299 ITVRTLEGATVVPAAALMMLSDGPSLYVVDEGKTATRRKVKALHTFG-TKVAVSGVEPGE 357

Query: 378 RLVLEGTDRLREGTKVEVVEDSSQVPTSPGQHLQGQEAKGAAQTGEAQPGNAAGKAG 434
           ++V+EG+  +R G KV V  D+     +PG      E+     TG   PG+AA   G
Sbjct: 358 QVVIEGSQNVRPGGKVRV--DAKAPAAAPG----APESPAKGTTG-VTPGSAASSDG 407