Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  194 bits (493), Expect = 4e-54
 Identities = 120/361 (33%), Positives = 184/361 (50%), Gaps = 8/361 (2%)

Query: 66  PVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDP 125
           PV V  V   +   + +  G + A   V+VRSRVAG +  +HF+EG  VK GDLL  IDP
Sbjct: 54  PVSVATVASSEINAWDEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGDLLVTIDP 113

Query: 126 RPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVK 185
            PY   +++AE  +A  QA+   ++ +  R K L+ + +IA++  D       +    ++
Sbjct: 114 APYAAEVERAEAQVASAQARQSFSRSEQERAKRLWDDKAIAQREFDERVNAGREADANLR 173

Query: 186 TNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAAN-DTTALVVITQTEPINVAFT 244
             QA +  ARLNL +TQ+RAP+SGR+G  ++ +GNLVAA      L  +    PI  +F 
Sbjct: 174 AAQASLQSARLNLGYTQVRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVSVSPIYASFD 233

Query: 245 LPETELSTVLERYRSGA-------SLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKF 297
             E  ++  L+   +G+       S+PV+    G      TG L  IDNQ+D  +GT++ 
Sbjct: 234 ADEQVITRALKDLPTGSSARGQIESIPVQMGTAGLDGTPFTGKLQLIDNQVDAKSGTVRV 293

Query: 298 KGRFENKDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGTFAYVVNEQSTVNVRKL 357
           +  F+NKD AL P QF  +R+        ++    AI    +  F  VV E S    R++
Sbjct: 294 RASFDNKDGALIPGQFARIRMGQARSDSALLVSERAIGTDQNKKFVMVVGEDSKATYREV 353

Query: 358 KVGASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVVEDSSQVPTSPGQHLQGQEAKG 417
            +GAS     V+  GLKAGDR+++ G   +R G  V   + +      P Q    + A+ 
Sbjct: 354 TLGASINGLRVVSKGLKAGDRVIVNGLQHIRPGALVAPQQVTMDAKADPKQQQPERVAEA 413

Query: 418 A 418
           A
Sbjct: 414 A 414