Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 383 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  167 bits (422), Expect = 7e-46
 Identities = 109/349 (31%), Positives = 171/349 (48%), Gaps = 5/349 (1%)

Query: 53  GGRPGFGGSSDPVPVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQ 112
           G +      + P  V VV +   D P+  +  G   A     VR +V G + K  F+EG 
Sbjct: 21  GAKQPPAAETPPPEVGVVTLHASDVPVRTELAGRTAAFRVSEVRPQVNGIVRKRLFEEGS 80

Query: 113 RVKAGDLLAEIDPRPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDT 172
            V+AG +L EI+P P+  A +QA   LA +QA + + +   +R+  L   +++++Q  + 
Sbjct: 81  MVRAGQVLYEIEPGPFEAAHEQARAALATSQASIASLRGKASRFGELIKANAVSRQEHEE 140

Query: 173 AEAQVAQFQGLVKTNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVV 232
           A+A + Q +  VK  QA V  AR+NL FT+I API+GR+G   +  G LV    T AL  
Sbjct: 141 AQAALVQAEAGVKAAQAAVKAARINLGFTRITAPIAGRIGRSSVTEGALVVPGQTAALAT 200

Query: 233 ITQTEPINVAFTLPETELSTVLERYRSG----ASLPVEAWDRGDSKLQSTGVLGSIDNQI 288
           I + +PI V       EL+ +  R+ SG    AS  V            TG L   +  +
Sbjct: 201 IQRLDPIYVDVVQSSLELTRLKRRFISGDMAPASTQVGLRMEDGLPYSHTGTLKFSEVAV 260

Query: 289 DTTTGTLKFKGRFENKDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDG-TFAYVVN 347
           D  TG++  +  F N    L P  +V  ++ +   +Q ++AP   +     G   A VV 
Sbjct: 261 DPATGSVTLRAEFPNPQGLLLPGMYVRAQVESGVERQAILAPQRGVARNEKGEPTALVVG 320

Query: 348 EQSTVNVRKLKVGASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVV 396
               V +R L++  + G+  ++  GL+ GDRLV++G  R   G KV+ V
Sbjct: 321 AGDKVELRALELRTTSGDQWIVSKGLREGDRLVVDGLQRAHPGDKVKPV 369