Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  171 bits (434), Expect = 3e-47
 Identities = 109/339 (32%), Positives = 169/339 (49%), Gaps = 5/339 (1%)

Query: 59  GGSSDPVPVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGD 118
           G ++   PV +V +      L  +  G V       VR+RV G ++   F+EG  VKAGD
Sbjct: 30  GAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPGIVLHKRFEEGADVKAGD 89

Query: 119 LLAEIDPRPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVA 178
           +L +IDP P++ AL +AE  LA+ QA  + AQ  + RY+ L   +++++Q  D+A A++ 
Sbjct: 90  VLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPLVKIEAVSQQDFDSATAELR 149

Query: 179 QFQGLVKTNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEP 238
                V++ QA V  ARLNL +  + APISGR+G      G LV   + T +  I Q +P
Sbjct: 150 SAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEGALVGQGEATLMARIQQLDP 209

Query: 239 INVAFTLPETELSTVLERYRSGA----SLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGT 294
           I + FT    +   + +  + GA    S  + A   G +  Q +G L   D  +D  TG 
Sbjct: 210 IYIDFTQSAADALRLRQALKDGALSADSQRLTAQVEG-TDFQRSGELMFTDVSVDRGTGQ 268

Query: 295 LKFKGRFENKDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGTFAYVVNEQSTVNV 354
           +  +GRF+N D  L P  +V VR    T    ++ P  A+Q G+DG    +V        
Sbjct: 269 VILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAVQRGSDGQARVLVATNGIAEA 328

Query: 355 RKLKVGASDGENSVILDGLKAGDRLVLEGTDRLREGTKV 393
           R ++ G   G    I +GL+ GD++++     L  G  V
Sbjct: 329 RAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPGMPV 367