Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  151 bits (382), Expect = 3e-41
 Identities = 113/351 (32%), Positives = 170/351 (48%), Gaps = 23/351 (6%)

Query: 67  VRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPR 126
           V VV ++   F L  +  G  +A     VR +V G ++K  FKEG  VK G  L +IDP 
Sbjct: 37  VGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPA 96

Query: 127 PYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKT 186
            Y       E TLA  +A L   +    RYK L  E +++KQ  D A A+  Q +  +K+
Sbjct: 97  VY-------EATLANAKANLLATRSLAERYKQLIDEQAVSKQEYDDANAKRLQAEASLKS 149

Query: 187 NQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLP 246
                  A+++L +T++ APISGR+G      G LV+   T A+  I Q +PI V  T  
Sbjct: 150 -------AQIDLRYTKVLAPISGRIGRSSFTEGALVSNGQTDAMATIQQLDPIYVDVTQS 202

Query: 247 ETELSTVLERYRSGA-------SLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKG 299
             EL  +     SG        +  V+      S  +  G L   +  +D TTG++  + 
Sbjct: 203 TAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLFKQEGRLEFSEVAVDETTGSVTLRA 262

Query: 300 RFENKDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGT-FAYVVNEQSTVNVRKLK 358
            F N D  L P  FV+ RL A      ++AP   +     G   A VVN+++ V +R+LK
Sbjct: 263 LFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTRDLKGAPTALVVNQENKVELRQLK 322

Query: 359 VGASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVVEDSS-QVPTSPGQ 408
              + G + +I +GL  GDRL+ EG   +R G +V+V + ++ + P  P Q
Sbjct: 323 ASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVKVSDATNVKKPAGPDQ 373