Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 430 a.a., efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score =  288 bits (738), Expect = 2e-82
 Identities = 171/401 (42%), Positives = 231/401 (57%), Gaps = 20/401 (4%)

Query: 19  LLLVAALAWWLWPAATPAHKEAGGVRGGKGMGMIGGRPGFGGSSDPVPVRVVPVRIGDFP 78
           L   A LA+ LWP   PA                GGRPG G    PV V V  V   D P
Sbjct: 46  LAAAAGLAFALWPTPQPAKT--------------GGRPG-GPDGRPVVVTVTSVARRDMP 90

Query: 79  LYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGT 138
           +Y  A+GTV A NTV VRSRV GELV++ FKEGQ V AGD+LA+IDPR YR   +QA  T
Sbjct: 91  IYLDAIGTVQAYNTVTVRSRVDGELVEVLFKEGQDVHAGDVLAQIDPRTYRAQYEQALAT 150

Query: 139 LAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKTNQAQVNDARLNL 198
             ++ AQL+ A+ DLARY  L   D ++ Q++DT  A V Q +  V+ ++A  ++A+  L
Sbjct: 151 RDKDSAQLEAAKRDLARYVSL--GDRVSGQSVDTQRALVRQLEATVRADEASASNAKTML 208

Query: 199 DFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLPETELSTVLERYR 258
            +T I API GR G+R +D GN+V A+D T LV +TQ +PI+V FTLP+  L+ V E+ R
Sbjct: 209 SYTVIAAPIDGRTGMRLVDRGNIVRASDATGLVTLTQVQPISVVFTLPQQSLAAVNEQLR 268

Query: 259 SGASLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFVNVRL 318
               L V+A       L  TG L  +DNQID TTGT+K K    N +  L+P  FVNVRL
Sbjct: 269 LDGKLAVQALRPETRALADTGELELVDNQIDQTTGTIKLKAVMPNAERKLWPGGFVNVRL 328

Query: 319 LADTLKQVVMAPAAAIQFGNDGTFAYVVNEQSTVNVRKLKVGASDGENSVILDGLKAGDR 378
           L  T K  ++ PA A+Q G  G + + V E  TV +R +KV   +   +++ +GL  GD 
Sbjct: 329 LLSTRKDGLVVPAQAVQRGPQGPYVFAVKEDRTVEMRAVKVATVEAGQALVDEGLAEGDT 388

Query: 379 LVLEGTDRLREGTKVEVVEDSSQVPTSPGQHLQGQEAKGAA 419
           +V+EGT +L+ G ++   + + +     GQ     E KG A
Sbjct: 389 VVVEGTAKLQPGARISTGDKAGE---GQGQGQGRGEGKGRA 426