Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 408 a.a., efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score =  167 bits (423), Expect = 6e-46
 Identities = 105/352 (29%), Positives = 176/352 (50%), Gaps = 7/352 (1%)

Query: 54  GRPGFGGSSDPVPVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQR 113
           G+P    ++   PV V  + + +  ++    G + A +   +R  V+G L ++   +GQ 
Sbjct: 47  GQPAQAAAAQAAPVTVQTMALRNVQVWSSFSGRMRAVDFAEIRPEVSGRLTQVRINDGQT 106

Query: 114 VKAGDLLAEIDPRPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTA 173
           VKAGD+L  IDP P+  AL +AE  LA  +     A+ +L R   L   ++IA++  D  
Sbjct: 107 VKAGDVLFVIDPAPFEAALAKAEANLATARTNAVFARTELDRAVNLIKTEAIAQRLYDER 166

Query: 174 EAQVAQFQGLVKTNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVV- 232
                     V   +A++  A +NLD   ++API+GRV   ++ LGN+V A     L+  
Sbjct: 167 ANADKVSHSAVLAAEAELKQAHINLDHAYVKAPIAGRVSRAEITLGNVVQAGPGAPLLTS 226

Query: 233 ITQTEPINVAFTLPETELSTVLERYRSGA-----SLPVEAWDRGDSKLQSTGVLGSIDNQ 287
           I   + I   F + E      + R + G+      +PV+   RGD      G + S DN+
Sbjct: 227 IVSNDGIYADFEVDEQTYMKGI-RTQDGSRDKERRIPVQITVRGDEAHPYLGTIQSFDNR 285

Query: 288 IDTTTGTLKFKGRFENKDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGTFAYVVN 347
           IDT +GT++ + RF+N D AL P  FV+V++ +   +  ++    AI       F YVV 
Sbjct: 286 IDTASGTIRARARFDNGDGALMPGMFVSVKVASGGDEPALLVQERAIGSDQSKKFVYVVG 345

Query: 348 EQSTVNVRKLKVGASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVVEDS 399
           +   V  R++ +G     + ++L GLKAG++++++G   +R    V V E S
Sbjct: 346 DDGKVAYREVGLGPQVDGSRIVLAGLKAGEKVIVDGLQHVRPNMAVTVQEAS 397