Pairwise Alignments

Query, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  169 bits (428), Expect = 1e-46
 Identities = 102/314 (32%), Positives = 170/314 (54%), Gaps = 5/314 (1%)

Query: 85  GTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQNQA 144
           GTV   N + +R +V+G + KI  ++GQ V  G  L EID   Y+ A +QA+ TL   +A
Sbjct: 55  GTVVPLNEIEIRPQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKA 114

Query: 145 QLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKTNQAQVNDARLNLDFTQIR 204
            L+  + DLARY+ L  +++IAKQ LD A+A +   +  V + +AQV     + +++ I 
Sbjct: 115 NLERVKKDLARYEALDKQEAIAKQQLDYAKADILTAESQVSSAEAQVRSTLTDYNYSVIT 174

Query: 205 APISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLPETELSTVLERYRSGASLP 264
           AP SG VG+ Q+ LG  V+A   + L  ++  +P+ V F + E ++     +     SLP
Sbjct: 175 APFSGTVGISQVRLGAQVSAGQ-SLLNTLSSNDPVLVDFVVNERDVRR-FSKMMKNESLP 232

Query: 265 VEAW--DRGDSKL-QSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFVNVRLLAD 321
              +    G++ + +  G L +ID  +   +GT+  +  F N D  L P   +N+R+L  
Sbjct: 233 DSTFTIQFGENDVYRHHGELTTIDRAVGRQSGTINMRVEFPNPDRELIPGMTLNLRVLNQ 292

Query: 322 TLKQVVMAPAAAIQFGNDGTFAYVVNEQSTVNVRKLKVGASDGENSVILDGLKAGDRLVL 381
            +   +  P  A+       F YVV + S V+ + +++G   G   V+ +GLK G ++V+
Sbjct: 293 DIGDQIAIPFKAVTEQMGEYFVYVVGDDSVVHQQNVQLGTKVGAEIVVREGLKPGQKIVV 352

Query: 382 EGTDRLREGTKVEV 395
           EG  +LREG KV++
Sbjct: 353 EGIQKLREGAKVQI 366



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 60  GSSDPVPVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGEL-VKIHFKEGQRV 114
           G    +P + V  ++G++ +Y     +V     V + ++V  E+ V+   K GQ++
Sbjct: 295 GDQIAIPFKAVTEQMGEYFVYVVGDDSVVHQQNVQLGTKVGAEIVVREGLKPGQKI 350