Pairwise Alignments

Query, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1038 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type) from Variovorax sp. SCN45

 Score = 1177 bits (3045), Expect = 0.0
 Identities = 614/1028 (59%), Positives = 792/1028 (77%), Gaps = 15/1028 (1%)

Query: 1    MNLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60
            M+ SR FILRPVAT+L M+AIVLAGL+A++ LP+SALPQVDYPTI+V TLYPG SP+VM+
Sbjct: 1    MSPSRPFILRPVATSLLMVAIVLAGLVAFRFLPLSALPQVDYPTIQVQTLYPGGSPEVMS 60

Query: 61   SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLP 120
            + VTAPLERQFGQM GL++M+STS+ G S++TL+F+L   +DVAEQ+VQAAINA  +LLP
Sbjct: 61   NTVTAPLERQFGQMSGLDRMSSTSAAGVSIITLQFSLGQTLDVAEQEVQAAINAGGSLLP 120

Query: 121  SDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGG 180
            +DLPAPPVY KVNPAD PVLTL+I+S T+PL ++ +LV+TR+AQK++Q+SGVG+VS++GG
Sbjct: 121  ADLPAPPVYAKVNPADAPVLTLSITSDTLPLTEVQNLVNTRLAQKISQVSGVGLVSLSGG 180

Query: 181  QRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSPEE 240
            QR AVRI+ N  ALA NG+ LD +RT I A+N N  KG+FDGP R   +++NDQL + ++
Sbjct: 181  QRPAVRIQANTQALATNGIGLDTLRTAIAAANSNGAKGSFDGPKRAYTINSNDQLLTVDD 240

Query: 241  YANLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENH--------AVLLNIQRQPGAN 292
            Y NLI++Y NGAP+R+ DVA++V+ AEN +L+AWA            A+++N+QRQPGAN
Sbjct: 241  YKNLIVSYKNGAPIRMVDVAQVVNSAENTQLSAWAGSKTESGTKLIPAIIMNVQRQPGAN 300

Query: 293  VIEVVDRIKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVF 352
            VI  VD IK  LP +   LP GL++SVL+DRT  IRA+V+ V+ EL++A+VLVV+V F F
Sbjct: 301  VIATVDAIKAQLPELQAGLPTGLNISVLSDRTAGIRASVEHVEMELVLAVVLVVLVIFAF 360

Query: 353  LRRFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISR 412
            L    AT+I SIAVP+SLIGTFG+MYL G+S+NNL+LMALTIATGFVVDDAIVM+ENI+R
Sbjct: 361  LGSLRATVIASIAVPISLIGTFGLMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENIAR 420

Query: 413  HIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAIL 472
            +IEEGE P+QAA KGA QIGFT+ISLT SLIAVLIPLLFM DVVGRLFREFA+TLA+ IL
Sbjct: 421  YIEEGEKPLQAAFKGATQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAVTLAITIL 480

Query: 473  ISLVVSLTLTPMMCARLLKREPKEEEQGRFYRASGA-WIDWLIQHYGSALQWVLKHQPLT 531
            IS VVSLTL PMM AR LK EPK +  G  + A    + D ++  Y  +L WV+ HQPLT
Sbjct: 481  ISAVVSLTLVPMMSARWLKHEPKRDTGGSGFGARAQRFFDGVMVRYDRSLHWVIDHQPLT 540

Query: 532  LLVAVASLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVILQD 591
            LLVA+ ++VLTV LY+ +PKG FP QDTG +Q   +A Q  SF  MS+ QQ  +  IL+D
Sbjct: 541  LLVALLTMVLTVVLYLTIPKGLFPTQDTGQLQARIQAAQDVSFDRMSQLQQEAAHAILED 600

Query: 592  PAVQSLSSYIGVDGDNAT-LNSGRLLINLKP-HGERDVSASEVISRLQPQVDRLVGIRLF 649
            P V++LSS++GVD  N T L++G +LINLK  HG++     +++ RL+  V  + G+ L+
Sbjct: 601  PEVENLSSFVGVDAANNTMLHTGSMLINLKKGHGDQQ----KIMDRLREHVHGVAGVTLY 656

Query: 650  MQPVQDLSIEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDLQDKGLQ 709
            +QP QDL+I+     T+Y+ SL   D+  +  W  KLV  LQ   ++ +V+SD   +GL 
Sbjct: 657  LQPTQDLTIDAETGPTEYRVSLEGVDSAAITAWMKKLVARLQDSDKVRNVSSDAGAQGLA 716

Query: 710  VYLVIDRDMASRLGISVSQITNALYDAFGQRQISTIYTQASQYRVVLQSSDAATIGPQAL 769
             ++ ++RD A+RL I+ S + +ALY AFGQR +STI+T+ +QYRV+L++       PQ L
Sbjct: 717  AFVNVNRDTAARLSITASTVDDALYSAFGQRIVSTIFTETNQYRVILEAMPGMVNTPQTL 776

Query: 770  ESIHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGEAVQVIEQ 829
              + + A  G    LSA+A I ++QA L I+H+ Q+PA TL+F+ A G SLG +V  I  
Sbjct: 777  GQLSLIAGSGTATPLSAIANISEQQAPLQITHVAQYPASTLNFDTAPGVSLGSSVDAIRA 836

Query: 830  VQKDIGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILST 889
              K+IG+P  +   F GA+ A++ SLS+ L LILAAVV +YIVLGVLYESY+HP+TILST
Sbjct: 837  AAKEIGLPSSITMTFLGASGAYEKSLSNQLWLILAAVVCVYIVLGVLYESYVHPLTILST 896

Query: 890  LPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERNQGMSPRDAI 949
            LPSA VGALLAL+I+GNDLG+I IIGIILLIGIVKKNAIMMIDFA++AERNQG S R+AI
Sbjct: 897  LPSAGVGALLALMITGNDLGVIGIIGIILLIGIVKKNAIMMIDFAIDAERNQGKSAREAI 956

Query: 950  YQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPV 1009
            +QAALLRFRPILMTTLAALF AVPLML+ G GAELR+PLGL + GGL+VSQ+LTLFTTPV
Sbjct: 957  HQAALLRFRPILMTTLAALFAAVPLMLSFGDGAELRRPLGLAIFGGLIVSQLLTLFTTPV 1016

Query: 1010 IYLYFDRL 1017
            IYL FDRL
Sbjct: 1017 IYLAFDRL 1024