Pairwise Alignments

Query, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1096 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtC (RND type) from Variovorax sp. SCN45

 Score =  878 bits (2268), Expect = 0.0
 Identities = 481/1087 (44%), Positives = 692/1087 (63%), Gaps = 71/1087 (6%)

Query: 1    MNLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60
            MNLS  F+ RP+ T L  + + LAG+ A+ +LPVS LPQVDYP I V    PGASP+ M 
Sbjct: 1    MNLSLPFVRRPIGTVLLTIGVALAGIAAFFVLPVSPLPQVDYPVISVSAAIPGASPETMA 60

Query: 61   SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLP 120
            ++V  PLER  G + G+ +M STSS G S +TL+F+L  +++ A ++VQAAI+A+   LP
Sbjct: 61   TSVATPLERHLGTIAGVNEMTSTSSVGTSRVTLQFDLSRDINGAAREVQAAISASRVDLP 120

Query: 121  SDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGG 180
            + L + P Y K NPA +PV+ LA++SKT    ++ D V   V+Q+L+Q+ GVG V I GG
Sbjct: 121  ATLRSNPTYRKANPASSPVIILALTSKTKTPGQIYDAVSNIVSQRLSQVDGVGDVEIGGG 180

Query: 181  QRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSPEE 240
               AVRI++   AL+  G++ DDVR  I ASN N+PKG   G  R   +          +
Sbjct: 181  SLPAVRIELLPFALSRYGISTDDVRAAIQASNANRPKGMVQGEGRKLQIYTQTPALRASD 240

Query: 241  YANLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGANVIEVVDRI 300
            YA +++A+ NGA +RL+DVAE++DG E+ R     N   A+++ I RQP AN+IE VD +
Sbjct: 241  YAPMVIAWRNGAAVRLQDVAEVLDGVEDTRTLGLFNGEPAIIVLITRQPSANIIETVDSV 300

Query: 301  KGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFSATL 360
            + LLP +   LP  + + V +D T +IR ++++V+  L+I+++LVV+V  +FLR   AT+
Sbjct: 301  RALLPELQAQLPPDVTLQVASDSTNSIRGSLREVEFTLVISVILVVLVVSLFLRSARATI 360

Query: 361  IPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEGETP 420
            +P++A   +L+GTFGVMYL GFS+NNL+LMALT+ATGFVVDDAIV+LEN SRHIE G T 
Sbjct: 361  VPAVATVAALLGTFGVMYLLGFSLNNLSLMALTVATGFVVDDAIVVLENTSRHIESGMTR 420

Query: 421  MQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLT 480
            M+AAL GA+++GFT++S++ SL+AV IPLLFM   VGRLFREFA+TL+ A++ISLV+SLT
Sbjct: 421  MKAALLGAKEVGFTVLSISVSLVAVFIPLLFMGGQVGRLFREFAVTLSAAVMISLVISLT 480

Query: 481  LTPMMCARLLK---REPKEEEQGRFYRASGAWIDWLIQHYGSALQWVLKHQPLTLLVAVA 537
             TPMMCA +LK      K + QGRF R +    DW+++ Y ++L W L  + L +L+ VA
Sbjct: 481  TTPMMCAWMLKPGGEHDKNKPQGRFGRMAARSYDWVLKRYENSLDWALDSKGLVMLILVA 540

Query: 538  SLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVILQDPAVQSL 597
             + L V+L+   PKGFFP QD+G + G   A QS S  AM+ + + +  +I  D AV ++
Sbjct: 541  VVGLNVYLFSAAPKGFFPQQDSGQLNGGLRADQSISSKAMAAKLREVVDIIRADEAVDTV 600

Query: 598  SSYIGVDGDNATLNSGRLLINLKPHGERDVSASEVISRLQPQVDRLVGIRLFMQPVQDLS 657
              + G     +    G + +NLKP  +R  S   VI+RL+P+++ + G+R+F+  VQD+ 
Sbjct: 601  VGFTG----GSRAGGGFMFVNLKPASQRKDSGLAVIARLRPKLNAVAGLRVFLGTVQDVR 656

Query: 658  IEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDLQDKGLQVYLVIDRD 717
               R S + YQ++L S +   L  W+ KL   ++ +P L D+ +D  + G++    +D++
Sbjct: 657  SGGRSSNSTYQYTLKSDNLADLRTWASKLADEMKLQPVLTDIDTDQTENGVETMANVDKN 716

Query: 718  MASRLGISVSQITNALYDAFGQRQI---------------------------STIYTQAS 750
             A+RLGI+ + + NALY+AFGQRQ+                           S +Y  A+
Sbjct: 717  TANRLGITSTAVDNALYNAFGQRQVATIYTELNQYHVVMEWAPRYTLSPNALSDVYVPAT 776

Query: 751  QYRVVL-----------------------------QSSDAATIGPQALESIHVKATDGGQ 781
            +  VV                               +S ++T  P +       A+ G  
Sbjct: 777  KTTVVAGQAVTTQVAAPTTTANSALSASKTAAGSTAASSSSTAVPVSANPALRNASSGNV 836

Query: 782  --------VRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGEAVQVIEQVQKD 833
                    V LSA+A+  +     ++SH     A T+SFNL  GA+LG+A + I + + +
Sbjct: 837  LSNTATSLVPLSAVAKFYENSVATSVSHQDGELATTVSFNLVEGANLGDAREAIAKAEAN 896

Query: 834  IGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSA 893
            I MP  V+  F G A + Q S S   +LILAA+V +YIVLG+LYES +HPIT+LSTLPSA
Sbjct: 897  IAMPTNVRGAFAGTAASAQQSQSQQAMLILAALVVIYIVLGILYESLVHPITVLSTLPSA 956

Query: 894  AVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERNQGMSPRDAIYQAA 953
             VGA+LALL+   +  +IA+IG+ LLIGIVKKNAI++IDFALEAER++G+SP +A+ +A 
Sbjct: 957  GVGAVLALLMFRMEFSIIALIGVFLLIGIVKKNAILIIDFALEAERSRGLSPLEAVREAC 1016

Query: 954  LLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLY 1013
            LLRFRPILMTT+AA  GA+PL +  G GAELR+PLG+ ++GGL+ SQ+LTL TTPV+YL 
Sbjct: 1017 LLRFRPILMTTMAAALGALPLAIGFGEGAELRRPLGVAIIGGLIASQMLTLLTTPVVYLL 1076

Query: 1014 FDRLARR 1020
             D+L RR
Sbjct: 1077 LDKLRRR 1083



 Score = 32.7 bits (73), Expect = 1e-04
 Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 14/184 (7%)

Query: 329  AAVKDVQHELLIAIVLVVMVTFVFLRRFSATLIPSIAVPLSLIGTFGV-------MYLAG 381
            A+ +  Q +  + I+  ++V ++ L     +L+  I V LS + + GV       M+   
Sbjct: 912  ASAQQSQSQQAMLILAALVVIYIVLGILYESLVHPITV-LSTLPSAGVGAVLALLMFRME 970

Query: 382  FSVNNLTLMALTIATGFVVDDAIVMLE-NISRHIEEGETPMQAALKGARQIGFTLISLTF 440
            FS+  + L+ + +  G V  +AI++++  +      G +P++A  +        ++  T 
Sbjct: 971  FSI--IALIGVFLLIGIVKKNAILIIDFALEAERSRGLSPLEAVREACLLRFRPILMTTM 1028

Query: 441  SLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLTLTP---MMCARLLKREPKEE 497
            +     +PL         L R   + +   ++ S +++L  TP   ++  +L +R   E 
Sbjct: 1029 AAALGALPLAIGFGEGAELRRPLGVAIIGGLIASQMLTLLTTPVVYLLLDKLRRRGANEH 1088

Query: 498  EQGR 501
            E  R
Sbjct: 1089 ELSR 1092