Pairwise Alignments
Query, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440
Subject, 1096 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtC (RND type) from Variovorax sp. SCN45
Score = 878 bits (2268), Expect = 0.0
Identities = 481/1087 (44%), Positives = 692/1087 (63%), Gaps = 71/1087 (6%)
Query: 1 MNLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60
MNLS F+ RP+ T L + + LAG+ A+ +LPVS LPQVDYP I V PGASP+ M
Sbjct: 1 MNLSLPFVRRPIGTVLLTIGVALAGIAAFFVLPVSPLPQVDYPVISVSAAIPGASPETMA 60
Query: 61 SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLP 120
++V PLER G + G+ +M STSS G S +TL+F+L +++ A ++VQAAI+A+ LP
Sbjct: 61 TSVATPLERHLGTIAGVNEMTSTSSVGTSRVTLQFDLSRDINGAAREVQAAISASRVDLP 120
Query: 121 SDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGG 180
+ L + P Y K NPA +PV+ LA++SKT ++ D V V+Q+L+Q+ GVG V I GG
Sbjct: 121 ATLRSNPTYRKANPASSPVIILALTSKTKTPGQIYDAVSNIVSQRLSQVDGVGDVEIGGG 180
Query: 181 QRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSPEE 240
AVRI++ AL+ G++ DDVR I ASN N+PKG G R + +
Sbjct: 181 SLPAVRIELLPFALSRYGISTDDVRAAIQASNANRPKGMVQGEGRKLQIYTQTPALRASD 240
Query: 241 YANLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGANVIEVVDRI 300
YA +++A+ NGA +RL+DVAE++DG E+ R N A+++ I RQP AN+IE VD +
Sbjct: 241 YAPMVIAWRNGAAVRLQDVAEVLDGVEDTRTLGLFNGEPAIIVLITRQPSANIIETVDSV 300
Query: 301 KGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFSATL 360
+ LLP + LP + + V +D T +IR ++++V+ L+I+++LVV+V +FLR AT+
Sbjct: 301 RALLPELQAQLPPDVTLQVASDSTNSIRGSLREVEFTLVISVILVVLVVSLFLRSARATI 360
Query: 361 IPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEGETP 420
+P++A +L+GTFGVMYL GFS+NNL+LMALT+ATGFVVDDAIV+LEN SRHIE G T
Sbjct: 361 VPAVATVAALLGTFGVMYLLGFSLNNLSLMALTVATGFVVDDAIVVLENTSRHIESGMTR 420
Query: 421 MQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLT 480
M+AAL GA+++GFT++S++ SL+AV IPLLFM VGRLFREFA+TL+ A++ISLV+SLT
Sbjct: 421 MKAALLGAKEVGFTVLSISVSLVAVFIPLLFMGGQVGRLFREFAVTLSAAVMISLVISLT 480
Query: 481 LTPMMCARLLK---REPKEEEQGRFYRASGAWIDWLIQHYGSALQWVLKHQPLTLLVAVA 537
TPMMCA +LK K + QGRF R + DW+++ Y ++L W L + L +L+ VA
Sbjct: 481 TTPMMCAWMLKPGGEHDKNKPQGRFGRMAARSYDWVLKRYENSLDWALDSKGLVMLILVA 540
Query: 538 SLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVILQDPAVQSL 597
+ L V+L+ PKGFFP QD+G + G A QS S AM+ + + + +I D AV ++
Sbjct: 541 VVGLNVYLFSAAPKGFFPQQDSGQLNGGLRADQSISSKAMAAKLREVVDIIRADEAVDTV 600
Query: 598 SSYIGVDGDNATLNSGRLLINLKPHGERDVSASEVISRLQPQVDRLVGIRLFMQPVQDLS 657
+ G + G + +NLKP +R S VI+RL+P+++ + G+R+F+ VQD+
Sbjct: 601 VGFTG----GSRAGGGFMFVNLKPASQRKDSGLAVIARLRPKLNAVAGLRVFLGTVQDVR 656
Query: 658 IEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDLQDKGLQVYLVIDRD 717
R S + YQ++L S + L W+ KL ++ +P L D+ +D + G++ +D++
Sbjct: 657 SGGRSSNSTYQYTLKSDNLADLRTWASKLADEMKLQPVLTDIDTDQTENGVETMANVDKN 716
Query: 718 MASRLGISVSQITNALYDAFGQRQI---------------------------STIYTQAS 750
A+RLGI+ + + NALY+AFGQRQ+ S +Y A+
Sbjct: 717 TANRLGITSTAVDNALYNAFGQRQVATIYTELNQYHVVMEWAPRYTLSPNALSDVYVPAT 776
Query: 751 QYRVVL-----------------------------QSSDAATIGPQALESIHVKATDGGQ 781
+ VV +S ++T P + A+ G
Sbjct: 777 KTTVVAGQAVTTQVAAPTTTANSALSASKTAAGSTAASSSSTAVPVSANPALRNASSGNV 836
Query: 782 --------VRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGEAVQVIEQVQKD 833
V LSA+A+ + ++SH A T+SFNL GA+LG+A + I + + +
Sbjct: 837 LSNTATSLVPLSAVAKFYENSVATSVSHQDGELATTVSFNLVEGANLGDAREAIAKAEAN 896
Query: 834 IGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSA 893
I MP V+ F G A + Q S S +LILAA+V +YIVLG+LYES +HPIT+LSTLPSA
Sbjct: 897 IAMPTNVRGAFAGTAASAQQSQSQQAMLILAALVVIYIVLGILYESLVHPITVLSTLPSA 956
Query: 894 AVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERNQGMSPRDAIYQAA 953
VGA+LALL+ + +IA+IG+ LLIGIVKKNAI++IDFALEAER++G+SP +A+ +A
Sbjct: 957 GVGAVLALLMFRMEFSIIALIGVFLLIGIVKKNAILIIDFALEAERSRGLSPLEAVREAC 1016
Query: 954 LLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLY 1013
LLRFRPILMTT+AA GA+PL + G GAELR+PLG+ ++GGL+ SQ+LTL TTPV+YL
Sbjct: 1017 LLRFRPILMTTMAAALGALPLAIGFGEGAELRRPLGVAIIGGLIASQMLTLLTTPVVYLL 1076
Query: 1014 FDRLARR 1020
D+L RR
Sbjct: 1077 LDKLRRR 1083
Score = 32.7 bits (73), Expect = 1e-04
Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 14/184 (7%)
Query: 329 AAVKDVQHELLIAIVLVVMVTFVFLRRFSATLIPSIAVPLSLIGTFGV-------MYLAG 381
A+ + Q + + I+ ++V ++ L +L+ I V LS + + GV M+
Sbjct: 912 ASAQQSQSQQAMLILAALVVIYIVLGILYESLVHPITV-LSTLPSAGVGAVLALLMFRME 970
Query: 382 FSVNNLTLMALTIATGFVVDDAIVMLE-NISRHIEEGETPMQAALKGARQIGFTLISLTF 440
FS+ + L+ + + G V +AI++++ + G +P++A + ++ T
Sbjct: 971 FSI--IALIGVFLLIGIVKKNAILIIDFALEAERSRGLSPLEAVREACLLRFRPILMTTM 1028
Query: 441 SLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLTLTP---MMCARLLKREPKEE 497
+ +PL L R + + ++ S +++L TP ++ +L +R E
Sbjct: 1029 AAALGALPLAIGFGEGAELRRPLGVAIIGGLIASQMLTLLTTPVVYLLLDKLRRRGANEH 1088
Query: 498 EQGR 501
E R
Sbjct: 1089 ELSR 1092