Pairwise Alignments

Query, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1056 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like from Variovorax sp. SCN45

 Score = 1040 bits (2688), Expect = 0.0
 Identities = 544/1031 (52%), Positives = 729/1031 (70%), Gaps = 20/1031 (1%)

Query: 1    MNLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60
            +++S  FI RP+ TTL  LAI+L G   + LLPV+ LPQVD+PTI+V    PGASP+ M 
Sbjct: 1    LSISATFIKRPIGTTLLALAILLVGAAVFPLLPVAPLPQVDFPTIQVSASLPGASPETMA 60

Query: 61   SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLP 120
            S V  PLER F  + GL QM STS  G + +TL+F+LD ++D A   VQAAINA++  LP
Sbjct: 61   SNVAQPLERNFSLIAGLSQMTSTSGLGNTQITLQFDLDRSIDAAALDVQAAINASTGQLP 120

Query: 121  SDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGG 180
            ++LP+PP + KVNPAD P+L L++ SKT+PL ++ND  D  +AQ+++QISGVG+V+I G 
Sbjct: 121  ANLPSPPTFRKVNPADAPILILSVQSKTLPLTEVNDYADNILAQQISQISGVGLVNIGGV 180

Query: 181  QRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSPEE 240
            Q+ AVR++V+   LAA GL+L+DVRT++ ++ VN PKG  DGP +   +  NDQL   + 
Sbjct: 181  QKPAVRVQVDPAKLAALGLSLEDVRTVLASATVNAPKGTIDGPNQSFTVYTNDQLLKAQP 240

Query: 241  YANLILAYNNGAPLRLKDVAEIVDGAENERLAAWA------------NENHAVLLNIQRQ 288
            + +++LAY NGAP+R++D+   VDG EN ++A WA                +++L I +Q
Sbjct: 241  WNDVVLAYRNGAPIRVRDLGVAVDGPENSKIAGWAYAGAAAPAGSNVQNGRSIVLAITKQ 300

Query: 289  PGANVIEVVDRIKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMV 348
            PGANVIE VDRI   LP +  ++P  +DV+ + DRTQTIRA+VKDV+  LL+ I LVV V
Sbjct: 301  PGANVIETVDRINAALPRLKASIPPTVDVNAIIDRTQTIRASVKDVEFTLLLTIALVVAV 360

Query: 349  TFVFLRRFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLE 408
             FVFLR   ATLIPS+ VPL+L+GT GVMYL G+S++NL+LMALTIA GFVVDDAIVMLE
Sbjct: 361  IFVFLRNVPATLIPSVTVPLALLGTVGVMYLLGYSLDNLSLMALTIAVGFVVDDAIVMLE 420

Query: 409  NISRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLA 468
            NI R++EEG T M+AA KGA +IGFT+IS++ SL+AV IPLL M  +VGRLFREFA+T+ 
Sbjct: 421  NIYRYVEEGMTAMEAAYKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480

Query: 469  VAILISLVVSLTLTPMMCARLLKREPKEEEQGRFYRASGAWIDWLIQHYGSALQWVLKHQ 528
            + I++S+++SLTLTPM+C+R LK E    + GR Y+      D ++  Y   L  VL HQ
Sbjct: 481  LTIVVSVIISLTLTPMLCSRFLKNE-HGNKHGRLYQLFERGFDAMLNGYKRGLHVVLDHQ 539

Query: 529  PLTLLVAVASLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVI 588
             +TL+V +A++  T  L+ V+PKGFFP QDTG I G +E+ Q  SFA+M+ R   L+ V+
Sbjct: 540  FITLMVFIATVAATGVLFAVIPKGFFPQQDTGFISGFAESAQDASFASMNARMIQLADVV 599

Query: 589  LQDPAVQSLSSYIGVDGDNATLNSGRLLINLKPHGE-RDVSASEVISRLQPQVDRLVGIR 647
             +DP V       G++G ++T N+G   I+LKP  E R  +A E+I+RL+PQ+ ++ G+ 
Sbjct: 600  RKDPDVTGF----GMNGSSSTYNTGNFYISLKPKDEGRTATADEIITRLRPQLAKVQGVN 655

Query: 648  LFMQPVQDLSIEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDLQDKG 707
            LF+Q  QD+ +  R SRTQYQ++++  D D L  W+ KL+   +Q PEL D+A+D Q+  
Sbjct: 656  LFLQAGQDIRVGGRASRTQYQYTVTDADLDELNTWAPKLLARFKQLPELTDLATDQQNAA 715

Query: 708  LQVYLVIDRDMASRLGISVSQITNALYDAFGQRQISTIYTQASQYRVVLQSSDAATIGPQ 767
                L IDRD AS  GIS + I   LYDA GQRQ++  +TQ + Y VVL+ +      P 
Sbjct: 716  ASAVLTIDRDRASSFGISPATIDATLYDAIGQRQVAQYFTQLNSYHVVLEVTPGVQQDPA 775

Query: 768  ALESIHVKAT-DGGQVRLSALARIE-QRQAQLAISHIGQFPAVTLSFNLAHGASLGEAVQ 825
                +++ +   G QV LS   +++  + A L+ISH GQFPAVT+SFNLA G +LG+AV 
Sbjct: 776  LFSKLYLSSPITGQQVPLSTFVKVDTSKTAYLSISHQGQFPAVTISFNLAPGVALGDAVN 835

Query: 826  VIEQVQKDIGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPIT 885
             I + Q ++G+P  +   FQG A+AFQ SL++   LI AA+V +YIVLG+LYESYIHP+T
Sbjct: 836  AINKAQAEMGLPQSLTGSFQGTAQAFQDSLATQPYLIAAALVAVYIVLGLLYESYIHPLT 895

Query: 886  ILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERNQGMSP 945
            ILSTLPSA VGALL L+  G DL +IA+IGIILLIGIVKKN IMMIDFAL+AER QGMSP
Sbjct: 896  ILSTLPSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALKAEREQGMSP 955

Query: 946  RDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLF 1005
             DAIYQA LLRFRPI+MTT+ AL   +PLML  GSG+ELR+PLG  MVGGL++SQ LTLF
Sbjct: 956  HDAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGSGSELRRPLGYAMVGGLILSQALTLF 1015

Query: 1006 TTPVIYLYFDR 1016
            TTPV+YLY DR
Sbjct: 1016 TTPVVYLYLDR 1026