Pairwise Alignments

Query, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1034 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

 Score =  539 bits (1389), Expect = e-157
 Identities = 334/1029 (32%), Positives = 551/1029 (53%), Gaps = 27/1029 (2%)

Query: 1    MNLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60
            M LS L + RPV + +  + + + GL+ Y  L V   P  D P + V T Y GA+  V+ 
Sbjct: 1    MQLSDLSVRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVE 60

Query: 61   SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLP 120
            + +T  +E     + G++ + STS  G S + + F+   ++D A   V+  + + +  LP
Sbjct: 61   TRITQQIEDAVAGVQGIQTITSTSQDGTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLP 120

Query: 121  SDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGG 180
             D  AP +  KV+     +L LA S       +++D +D  +A + A I GV  V+I G 
Sbjct: 121  EDALAPEI-RKVDSDARSILFLAFSRPGWSPIQISDYLDRNIADRFAAIDGVARVTIGGE 179

Query: 181  QRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSPEE 240
             R + RI  N + LAA GL   DV   +   NV  P G F+   +   L       +P++
Sbjct: 180  ARPSTRIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRFESKDQNQTLRVERPFATPDQ 239

Query: 241  YANLILAYN-NGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGANVIEVVDR 299
            +A L++    +G  ++L DVA I +GAEN   +  +N+  A+ + I RQ GAN +EV  +
Sbjct: 240  FAQLVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGTAIGIGIIRQSGANTLEVAQK 299

Query: 300  IKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFSAT 359
             K L+  +   LP G+ V++ TD +  I  A+ +V   L+ A +LV++V F+FL    AT
Sbjct: 300  AKALIKELEPTLPKGMKVAIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFLGSVRAT 359

Query: 360  LIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEGET 419
            ++P++ VP+ L+ T  VM+L G S+N LTL+A  +A G VVDDAIV+LEN+   +E+G+ 
Sbjct: 360  IVPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHRVEQGDD 419

Query: 420  PMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSL 479
            P+ AA  G RQ+GF +IS T  + AV +P++F+A   G LFRE AI +  AI  S  +SL
Sbjct: 420  PLVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIGFSGFISL 479

Query: 480  TLTPMMCARLLKREPKEEEQGRFYRASGAWIDWLIQH----YGSALQWVLKHQPLTLLVA 535
            +L PM+C++LL    K  E+GR  R    W+D   Q     YG  L W LK   + LL  
Sbjct: 480  SLAPMLCSKLL----KNAERGRLAR----WVDDRFQRIEHGYGRWLDWTLKKPLMPLLGV 531

Query: 536  VASLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSK---VILQDP 592
               L +  FL+  +P    P +DTGV++    AP+ T F  M    Q +      + +D 
Sbjct: 532  AIFLGVAFFLFTRLPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDLAFLRKDG 591

Query: 593  AVQSLSSYI-GVDGDNATLNSGRLLINLKPHGERDVSASEVISRLQPQVDRLVGIRLFMQ 651
             +Q+L     G  G     N+G ++  L+P  +R ++ +EV + +   +    G+R    
Sbjct: 592  TLQNLVIRTPGGFGTTDDYNNGNVIAFLRPWEDRTITTAEVATIINKVIADQPGVRGNAA 651

Query: 652  PVQDLSIEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDLQDKGLQVY 711
            P   L    R         L+    + L     +++ A    P L ++ SD ++   Q+ 
Sbjct: 652  PRSGLG---RGRGLPVNIVLAGSTYEGLVAARDRIMLAAASYPGLINLDSDYKETKPQMR 708

Query: 712  LVIDRDMASRLGISVSQITNALYDAFGQRQISTIYTQASQYRVVLQSSDAATIGPQALES 771
            +  D   A  LG+SV+ ++ AL    G R+++T   +  +YRV++Q+          LE 
Sbjct: 709  IETDLQRAGDLGVSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAERDGRQTLADLER 768

Query: 772  IHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGEAVQVIEQVQ 831
            I V++  G  V LSA+  + +      ++   +  A+TL+  LA G SLG+ +  +E   
Sbjct: 769  IQVRSRRGVLVPLSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSLGQGLAFLEDQA 828

Query: 832  KDIGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLP 891
            +    P  +   ++G +++ + +  S  ++    ++ +Y++L   +ES+IHP  I++T+P
Sbjct: 829  RQ--SPEVLAIGYRGESQSLRETGGSIWIVFGLTILIVYLLLAAQFESFIHPGVIIATVP 886

Query: 892  SAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERNQGMSPRDAIYQ 951
             A  G  L L I+G  + + + IGI++L+G+  KN I++++FA +  R++GM   +AI +
Sbjct: 887  LAVAGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEFANQL-RDEGMEIAEAIRE 945

Query: 952  AALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIY 1011
            AA  R RPILMT++A + GAVPL+L  G+GA  R  +G+V+V G+ ++ ++TLF  P+ Y
Sbjct: 946  AAKRRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLATLITLFLIPIFY 1005

Query: 1012 LYFDRLARR 1020
                R+A+R
Sbjct: 1006 ---SRVAKR 1011



 Score = 47.8 bits (112), Expect = 4e-09
 Identities = 61/356 (17%), Positives = 154/356 (43%), Gaps = 22/356 (6%)

Query: 157  LVDTRVAQKLAQISGVGMVSIAGGQRQA---VRIKVNVDALAANGLNLDDV----RTLIG 209
            LV  R    LA  S  G++++    ++    +RI+ ++      G++++DV    ++L+G
Sbjct: 676  LVAARDRIMLAAASYPGLINLDSDYKETKPQMRIETDLQRAGDLGVSVNDVSQALQSLLG 735

Query: 210  ASNVNQPKGNFDGPTRVSMLDANDQLRSPEEYANLILAYNNGAPLRLKDVAEIVDGAENE 269
            +  V       +   RV +    D  ++  +   + +    G  + L  V  + + A   
Sbjct: 736  SRRVTTYVDRGE-EYRVLVQAERDGRQTLADLERIQVRSRRGVLVPLSAVVTVREVAGPR 794

Query: 270  RLAAWANENHAVLLNIQRQPGANVIEVVDRIKGLLPSITDNLPAGLDVSVLTDRTQTIRA 329
            +L  + N+  A+ L     PG ++ +        L  + D      +V  +  R ++   
Sbjct: 795  QLNRY-NKLRAITLTAALAPGTSLGQG-------LAFLEDQARQSPEVLAIGYRGES--Q 844

Query: 330  AVKDVQHELLIAIVLVVMVTFVFLR-RFSATLIPSI---AVPLSLIGTFGVMYLAGFSVN 385
            ++++    + I   L +++ ++ L  +F + + P +    VPL++ G    + + G S+N
Sbjct: 845  SLRETGGSIWIVFGLTILIVYLLLAAQFESFIHPGVIIATVPLAVAGGALGLAITGGSIN 904

Query: 386  NLTLMALTIATGFVVDDAIVMLENISRHIEEGETPMQAALKGARQIGFTLISLTFSLIAV 445
              + + + +  G    + I+++E  ++  +EG    +A  + A++    ++  + + +  
Sbjct: 905  LYSQIGIVMLVGLAAKNGILIVEFANQLRDEGMEIAEAIREAAKRRLRPILMTSIATVIG 964

Query: 446  LIPLLFMADVVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQGR 501
             +PL+              + +   + ++ +++L L P+  +R+ KR    +  GR
Sbjct: 965  AVPLVLRGGAGAAARHSIGVVIVFGVSLATLITLFLIPIFYSRVAKRTVSPQTVGR 1020