Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1035 a.a., efflux RND transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

 Score =  829 bits (2142), Expect = 0.0
 Identities = 454/1025 (44%), Positives = 652/1025 (63%), Gaps = 14/1025 (1%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            MNLS PFI RPVAT LL  AI +LG + F  LPVAPLP +DFP I V+A L GASP  MA
Sbjct: 1    MNLSAPFIARPVATTLLMAAIAVLGLIVFPRLPVAPLPAIDFPTIQVTATLPGASPATMA 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            ++VATPLER+LG IAGV+ +TS S QG+T + + F L R+ID AA++VQAA+ A    LP
Sbjct: 61   ASVATPLERQLGQIAGVSEMTSFSAQGATSITVQFALNRNIDAAAQDVQAALTAASKSLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
            + M + PT+KK++P+ API++L+ TS  L    + D  D +L++S++QVSGV EV +GG 
Sbjct: 121  TTMTTPPTWKKLDPADAPILILAATSSSLPLTTVDDEVDNLLARSISQVSGVAEVALGGE 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
              PA+R+ ++P  L    L+L++ R A+  A+     G ++     + + ANDQL  AK 
Sbjct: 181  QQPAIRVQLDPAKLAAMGLTLEQARAALVAASTDAAKGALDTPTTGYTIAANDQLTEAKK 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQI 300
            +E VV+  +NG  ++++DV        +R  + ++++Q A+LL + RQ GAN+I+TV++I
Sbjct: 241  FEHVVLAYRNGAPVQVADVGRAVRAAADRTAAAYYDNQPAILLTIYRQPGANVIDTVNRI 300

Query: 301  KAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASL 360
            KA+LP L + LPA V+++  +DR+  I+A++++ E TL++ V LV+LVV LFL +L A++
Sbjct: 301  KARLPELTANLPAGVEVHTVLDRTTTIRASVRDVEFTLVLTVALVVLVVALFLRNLLATV 360

Query: 361  IPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPP 420
            IP + + V L+GTFA M   GFSL+NLSLMAL +A G VVDD IVV+ENI RH+E G+P 
Sbjct: 361  IPGITLIVVLLGTFAAMGWFGFSLDNLSLMALTIAVGFVVDDVIVVIENIYRHVEAGEPA 420

Query: 421  MKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLT 480
              AA  G +E+GFT+LSM++SLV V +   FM G++  +F+EF+ T+ AA++VS +V+LT
Sbjct: 421  SAAALHGTREIGFTVLSMSLSLVFVLLPTAFMSGVIGRMFREFAFTVIAAVVVSALVALT 480

Query: 481  LTPMLCARWLKPQQAEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLATIGIN 540
            L PMLCARW+ P Q       R  +   +R+ A Y  SL   L H    L   LAT+ + 
Sbjct: 481  LAPMLCARWIHPAQRAPGLWSRRIEQGFERLTAGYRRSLDRVLAHAPWMLAGFLATMVLA 540

Query: 541  IALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQSVAGFIG 600
            +AL   +PK   P QDTG +         +S   MQ         +  DPAV  VA + G
Sbjct: 541  VALAWAIPKGFFPTQDTGLIGALADAAQSVSPARMQQLERRIDAVVATDPAVAGVASWTG 600

Query: 601  GNSGT------NNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDLQLG 654
               G       N A   + LKP SERK+ A +VIERL   L  +    L L A QD+ +G
Sbjct: 601  STGGNGFAQTQNTARYFIVLKPHSERKLAAPRVIERLNHALRDIGDAALHLHAVQDITVG 660

Query: 655  GGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPEL--TAIDARDGAGTQQVTLVV 712
            G     +   Y +TLQ  +L  LR W  K++AA+  LPE+   A D +D A   Q+ + +
Sbjct: 661  G---RSSRGNYQFTLQDANLDELRHWSAKMLAAMHRLPEIEGVASDLQDAA--PQLGIAI 715

Query: 713  DRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQV 772
            DR  A +LG+ +  +   L++AY QRQIS  +  +  Y ++LE  P+      +L+ + V
Sbjct: 716  DRATAAKLGVSIQSIDDTLDDAYGQRQISQYFTQVGTYPLILEATPQQLHRLGSLDDLYV 775

Query: 773  ITADGARVPLSTIAHYENSLAND-RVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVAK 831
             +   + VPLS +   +        + H+GQF + +++F++  G S  QA+AA+ +A   
Sbjct: 776  KSTTNSTVPLSAVVRVDTEATGPLSIVHQGQFPAVNLSFNLRPGVSLGQAVAAIRQAAQA 835

Query: 832  LGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSA 891
            +G+P  V  K  G A AF Q+     +M L  ++ VY+VLGILYE YIHPLTILSTLPSA
Sbjct: 836  IGMPAGVARKFTGNAGAFEQSLASLAWMFLLTVVAVYVVLGILYEDYIHPLTILSTLPSA 895

Query: 892  GVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRAC 951
            G+GAL+AL +   + S+I ++G+ L+ G+VKKN I+++D A+  ER +G +P E+IR AC
Sbjct: 896  GLGALVALDLAHMDLSVIGMIGVVLVTGIVKKNGIMLVDFAIAAERERGLAPREAIREAC 955

Query: 952  LLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLY 1011
            LLR RPILMTT+AA+L  + L +    GAE+R+PLG+ I+GGLVFSQ+LTLY+TPVVYLY
Sbjct: 956  LLRFRPILMTTMAALLAGVALAVGGGTGAELRRPLGVAIVGGLVFSQLLTLYSTPVVYLY 1015

Query: 1012 LDRLR 1016
            LDRLR
Sbjct: 1016 LDRLR 1020