Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1079 a.a., efflux RND transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

 Score =  836 bits (2159), Expect = 0.0
 Identities = 464/1075 (43%), Positives = 679/1075 (63%), Gaps = 56/1075 (5%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            M  S  FIRRP+AT LL +A++LLG + +  LPV+ LP+++ P +VVS    GAS   MA
Sbjct: 1    MGFSTLFIRRPIATSLLMVAVLLLGILGYRQLPVSALPEIEAPSLVVSTQYPGASASTMA 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            + + TPLER LG I+G+T ++S S+ G + +++ F + RDID AA++VQAAIN  +  LP
Sbjct: 61   ALITTPLERNLGQISGLTMMSSDSSAGLSTIILQFSMDRDIDIAAQDVQAAINQAKGTLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
              +   P Y ++NP+ API+ L LTSD  Q  ++ DLAD+I++Q L+QV GVG V I G+
Sbjct: 121  GNLPYPPVYNRVNPADAPILTLKLTSDSRQLREVNDLADSIIAQKLSQVQGVGLVSIAGN 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
              PAVR+ V P  L+   L++++VR+A++ AN   P G +    +++ +  NDQL  A +
Sbjct: 181  VRPAVRVQVNPAQLSNLGLTMEDVRSALTQANVNAPKGTLNGKTQSYSIGTNDQLSDAAE 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQI 300
            Y+  +I  +N + +RLSDVA V DGVEN   + + N Q AVLL V RQ GANI++TV+QI
Sbjct: 241  YKNTIISYKNNSPVRLSDVANVVDGVENDQLAAWANGQPAVLLDVRRQPGANIVQTVEQI 300

Query: 301  KAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASL 360
            +  LP L+S LPA V L+V  DR+  I+A++++ E TL++ V LVI V+++FL  L A++
Sbjct: 301  RRVLPELRSALPADVHLDVFADRTVTIRASVRDVEFTLILTVFLVIGVIFVFLRRLWATI 360

Query: 361  IPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPP 420
            IPS+AVP+SL+GTF VM   G SL+NLSLMAL +ATG VVDDAIV++ENI R+IE G+  
Sbjct: 361  IPSVAVPLSLMGTFGVMAFTGMSLDNLSLMALTVATGFVVDDAIVMIENIVRYIEQGKDG 420

Query: 421  MKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLT 480
             +AA +GAKE+GFT+LS+ VSLVAVF+ +L M G+   LF EF+  L  A+ +S++VSLT
Sbjct: 421  KEAAEVGAKEIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLTIAVTISMLVSLT 480

Query: 481  LTPMLCARWLKPQQ------AEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLL 534
            LTPM+CA  LKP Q      A +        T+  R V+ Y+ SL W L H+RLT+L   
Sbjct: 481  LTPMMCAYLLKPDQLPEGDDAHERHAAAGKRTVWSRTVSLYERSLDWVLDHQRLTMLVAG 540

Query: 535  ATIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQS 594
            A + + + LY+V+PK L+P+QDTG + G ++ DD ++F  M+ + +    AL  DPAV  
Sbjct: 541  AAVVLTVFLYIVIPKGLLPEQDTGLITGVVQADDNIAFPQMEDRTKAVAEALRKDPAVAG 600

Query: 595  VAGFIGG---NSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDL 651
            VA FIG    N   N   + + LK   +R     +++ RL+  +  +PG  L+L   QD+
Sbjct: 601  VAAFIGAGTINPTLNQGQLSIVLKDRGDRD-GLDELLPRLQHAVAGIPGVALYLKPVQDV 659

Query: 652  QLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLV 711
             L        +++Y Y+L +   + L  +  ++  A+R  PEL  +D         + L 
Sbjct: 660  TLDS---RVAATEYQYSLSAVKSSELAGYANQMTQAMRQRPELADVDNNLADNGNALKLT 716

Query: 712  VDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQ 771
            +DR++A RLG+ +  +   L +A+ QRQISTI+  LNQY+VVLE+ P++      L ++ 
Sbjct: 717  IDREKASRLGVPVQTIDDTLYDAFGQRQISTIFTQLNQYRVVLEVAPEFRTSDDLLTKLT 776

Query: 772  V-------ITAD-------------------------------GARVPLSTIAHYENSLA 793
            V       +T                                 G  +PLS++   + + A
Sbjct: 777  VRGNGNGALTGSTATSFGQLKSSNSATPSGIGNTGNIGFEIGAGGSIPLSSLVSAQMTSA 836

Query: 794  NDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVAKLGLPEEVIAKLGGTADAFAQTQ 853
               VSH+ Q  +  +AF+VA GYS   A+AA+ +  A+L  P ++  +  G A  FA + 
Sbjct: 837  PLVVSHQQQLPAVTLAFNVAPGYSLSDAVAAIHQVEAQLNFPPQIRGEFVGKAAEFASSL 896

Query: 854  QGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLG 913
              +  ++L A++++Y+VLG+LYESYIHPLTI+STLP AGVGALLAL + G   S+  ++G
Sbjct: 897  GDEVLLLLAAIIVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALILCGMSLSVDGIVG 956

Query: 914  LFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRACLLRLRPILMTTLAAILGALPLL 973
            + LLIG+VKKNAI+MID A++  R  G    ++IRRACLLR RPI+MTT AA+LGALPL 
Sbjct: 957  IVLLIGIVKKNAIMMIDFAIE-ARRTGLDARDAIRRACLLRFRPIMMTTAAAMLGALPLA 1015

Query: 974  LSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLYLDRLRHRFNRWRGVRTD 1028
            L    GAE+R+PLG++I+GGL+ SQ++TLYTTPV+YLY++    RF+ W   R +
Sbjct: 1016 LGNGIGAELRRPLGVSIVGGLLLSQLVTLYTTPVIYLYME----RFSDWLAERRE 1066