Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1045 a.a., Multidrug resistance protein MdtB from Xanthobacter sp. DMC5

 Score =  929 bits (2400), Expect = 0.0
 Identities = 488/1029 (47%), Positives = 699/1029 (67%), Gaps = 10/1029 (0%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            MN+S PFIRRP+AT LL  A++L+G V++ LLPVAPLPQ+DFP I VSA+L GASPE MA
Sbjct: 1    MNVSAPFIRRPIATTLLMAALLLVGLVAYPLLPVAPLPQVDFPTIQVSASLPGASPETMA 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            S+VATPLER+   IAGVT +TS+S  G   + I F+LGR ID AA++VQ+AINA    LP
Sbjct: 61   SSVATPLERQFSQIAGVTQMTSTSALGVAAITIQFDLGRSIDAAAQDVQSAINAASGQLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
              + S PT++KINP+ API++LS+ SD+    +L D ADTIL+Q ++Q+ G+ +V I G 
Sbjct: 121  KNLPSPPTFRKINPADAPILILSVQSDLYPLTKLDDSADTILAQQMSQIPGIAQVAITGE 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
              PAVR+ V+P  +    +SL++VR  ++ A   +P G  +   + + + A+DQL +A  
Sbjct: 181  QKPAVRVQVDPAKIAALGMSLEDVRAVLAAATVDQPKGSFDGPAQGFTIYADDQLLTALP 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQI 300
            +  VV+  +NG  +R+ D+    DG EN   + + + +  + L+V +Q GAN+I+ VD++
Sbjct: 241  WNEVVVAYKNGAPVRIRDIGRAVDGPENARLASWQDGKRGIQLIVFKQPGANVIDAVDRV 300

Query: 301  KAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASL 360
            KA +P L++ LP  + + +  DR+  I+A++ + + T+LI + LV+ V++ FL SL A++
Sbjct: 301  KAAIPRLEASLPPGITVKIIGDRTETIRASVDDVQLTMLITIALVVAVIFAFLRSLWATI 360

Query: 361  IPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPP 420
            IPS+ VP++L+GTFAVMYV G+SL+NLSLMAL +A G VVDDAIV+LENI R+IE G PP
Sbjct: 361  IPSVTVPMALIGTFAVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLENIYRYIEEGMPP 420

Query: 421  MKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLT 480
             +AA  GA E+GFT++S+++SLVAVF+ +L MGGIV  L  EF++T+   I+VS+VVSLT
Sbjct: 421  FEAALKGAGEIGFTIISISLSLVAVFIPVLLMGGIVGRLLHEFAVTVTITILVSVVVSLT 480

Query: 481  LTPMLCARWLKPQ-QAEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLATIGI 539
            LTPM+C+ +LK +   +  R    ++     M+  YD  L W L H+ LTL+SLLAT+  
Sbjct: 481  LTPMMCSLFLKNEHNVKHGRAYMAAEAFFDGMLKVYDTGLKWVLSHQFLTLMSLLATVAA 540

Query: 540  NIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQSVAGFI 599
               LYV +PK   PQQDTG + GF      +SF+ M  K       +  DPA++ V+G +
Sbjct: 541  TGWLYVAIPKGFFPQQDTGFIQGFSEAAQDISFSAMTSKQMALLDIVARDPAIEHVSGSV 600

Query: 600  GGNSGT---NNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDLQLGGG 656
            G   G+   N   V + LKP +ER + A +VI RLR +L KV G  LFL A QD+ +GG 
Sbjct: 601  GATGGSQTINTGRVWITLKPRNERDVTADEVIHRLRPQLAKVEGIALFLQASQDINVGGR 660

Query: 657  GRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLVVDRDQ 716
                + +QY YTLQ  +L  L  W P+++A L++LPELT +          V+L +DRD 
Sbjct: 661  A---SRTQYQYTLQDANLDELNAWGPRMLAKLKSLPELTDVATDQQTNAPTVSLTIDRDT 717

Query: 717  AKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQVIT-A 775
            A R GI   ++   L +A+ QRQ++  +  L+QY V+LE++PK   DP  L++V V +  
Sbjct: 718  AARFGILPQVIDDTLYDAFGQRQVAQYFTQLSQYHVILEVDPKLQTDPGALDKVYVRSPR 777

Query: 776  DGARVPLSTIAHYENS-LANDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVAKLGL 834
             G  +PLS     +NS  A   +SH+GQF +  ++F++A G +  QA+ A+++A  + G+
Sbjct: 778  TGEEIPLSAFVKVDNSKTAYLSISHQGQFPAVTLSFNLAPGVALGQAVDAIKQAEQEAGM 837

Query: 835  PEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAGVG 894
            P+ +I    GTA AF  + + QP++IL A++ VY++LG+LYES+IHPLTILS+LPSAGVG
Sbjct: 838  PQTLIGTFQGTAQAFQNSLRTQPYLILAAIVAVYIILGVLYESFIHPLTILSSLPSAGVG 897

Query: 895  ALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRACLLR 954
            ALL LYV G + S+I+L+G+ LLIG+VKKNAI+MID AL  ER +G SPE+SI  ACL+R
Sbjct: 898  ALLVLYVAGYDLSVIALIGILLLIGIVKKNAIMMIDFALVRER-EGKSPEDSIYEACLIR 956

Query: 955  LRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLYLDR 1014
             RPI+MTT+AA+LGALPL+L    G+E+R+PLG  I+GGL+ SQ+LTLYTTPVVYLY+ R
Sbjct: 957  FRPIMMTTMAALLGALPLMLGSGTGSELRRPLGFAIVGGLMVSQVLTLYTTPVVYLYMVR 1016

Query: 1015 LRHRFNRWR 1023
            L+    R R
Sbjct: 1017 LQRWLTRKR 1025