Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1033 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score =  912 bits (2357), Expect = 0.0
 Identities = 485/1027 (47%), Positives = 687/1027 (66%), Gaps = 10/1027 (0%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            MNLS  FI RPVAT L  LAI+L G +++ LLPV+ LPQ+D+P I V     GASP+VM 
Sbjct: 1    MNLSRLFILRPVATTLSMLAIVLAGIIAYRLLPVSALPQVDYPTIRVMTLYPGASPDVMT 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            S V  PLER+ G + G+T + S+S+ G++ + + F L  ++D A ++VQAAINA  NLLP
Sbjct: 61   SAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFNLDINMDVAEQQVQAAINAATNLLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
              + + P Y K+NP+  P++ L++TS  +   +L DL DT ++Q +AQ+SGVG V I G 
Sbjct: 121  KDLPAPPVYNKVNPADTPVLTLAITSKTMLLPKLNDLVDTRMAQKIAQISGVGMVSIAGG 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
               AVRI V P+ L    L+L +VRT ++ +N  +P G  +   R   + ANDQL S + 
Sbjct: 181  QRQAVRIKVNPEALAANGLNLSDVRTLIAASNVNQPKGNFDGPTRVSMLDANDQLVSPQQ 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQI 300
            Y  +++   NG  LRL DVA + DG EN   + + N   AVLL + RQ GAN+IE VD+I
Sbjct: 241  YAELILAYNNGAPLRLKDVAQIVDGAENERLAAWANQNQAVLLNIQRQPGANVIEVVDRI 300

Query: 301  KAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASL 360
            KA LP++   LPA + + V  DR+  I+A++K+ +H LLIA+ LV++V +LFL  + A+L
Sbjct: 301  KALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRVSATL 360

Query: 361  IPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPP 420
            IPS+AVP+SLVGTF VMY+ GFS+NNL+LMAL +ATG VVDDAIV+LENISR+IE G+ P
Sbjct: 361  IPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMLENISRYIEEGETP 420

Query: 421  MKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLT 480
            + AA  GAK++GFTL+S+ +SL+AV + +LFM  +V  LF+EF+ITLA AI++SLVVSLT
Sbjct: 421  LAAALKGAKQIGFTLISLTLSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLT 480

Query: 481  LTPMLCARWLK--PQQAEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLATIG 538
            LTPM+CAR LK  P++ EQ+R  + S      ++A Y   L W L+H+ LTLL  +AT+G
Sbjct: 481  LTPMMCARLLKREPKEEEQSRFYKASGAWIDWLIARYGSMLQWVLKHQPLTLLVAIATLG 540

Query: 539  INIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQSVAGF 598
            + + LY+VVPK   P QDTG + G       +SF  M  + +   + +LADPAV+S++ +
Sbjct: 541  LTVVLYLVVPKGFFPVQDTGVIQGISEAPQSISFAAMSQRQQELAKIILADPAVESLSSY 600

Query: 599  I---GGNSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDLQLGG 655
            I   G N+  N+  +L+ LK   +R + A +VI RL+ E+ ++ G RLF+   QDL +  
Sbjct: 601  IGVDGDNATLNSGRLLINLKAHGQRDLSAAQVITRLQPEIDRLVGIRLFMQPVQDLTI-- 658

Query: 656  GGRDQTS-SQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLVVDR 714
               D+ S +QY +++ S D   L  W  K+V AL  LPELT + +       QV LV+DR
Sbjct: 659  --EDRVSRTQYQFSMSSPDAELLALWSDKLVHALSQLPELTDVASDLQDKGLQVYLVIDR 716

Query: 715  DQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQVIT 774
            D A RLG+ +  +T  L +A+ QRQISTIY   +QY+VVL+        P  L Q+ V T
Sbjct: 717  DAASRLGVSVSTITDALYDAFGQRQISTIYTQASQYRVVLQAQSGETLGPEALNQIHVKT 776

Query: 775  ADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVAKLGL 834
             DG +V LS++AH E   A   ++H GQF +  ++F++A G +  + +  + +    +G+
Sbjct: 777  TDGGQVRLSSLAHVEQRQAQLAIAHIGQFPAVMMSFNLAPGVALGKGVELINQTQKDIGM 836

Query: 835  PEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAGVG 894
            P  V  +  G A AF  +      +IL A++ +Y+VLG+LYESYIHP+TILSTLPSA VG
Sbjct: 837  PVGVQTQFQGAAQAFEASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVG 896

Query: 895  ALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRACLLR 954
            ALLAL ++G +  +I+++G+ LLIG+VKKNAI+MID AL  ER+QG  P+ +I +A LLR
Sbjct: 897  ALLALLLSGNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERNQGLDPQTAIYQAALLR 956

Query: 955  LRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLYLDR 1014
             RPILMTTLAA+ GA+PL+L+   GAE+RQPLGL ++GGL+ SQ+LTL+TTPV+YLY DR
Sbjct: 957  FRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLYFDR 1016

Query: 1015 LRHRFNR 1021
            L  R+ +
Sbjct: 1017 LGRRWRK 1023