Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1050 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  761 bits (1965), Expect = 0.0
 Identities = 410/1029 (39%), Positives = 640/1029 (62%), Gaps = 18/1029 (1%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            MN+S   IRRP  T+LLS A++++G  ++  +PVA LP  + PVI V+A L GASP+ MA
Sbjct: 1    MNISELCIRRPAMTVLLSAAVVVIGIFAYFSIPVAALPSYNTPVINVNAQLPGASPDTMA 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            S+VA PLE++  +I G+ T++S + QG T + + F   RDID AA +VQAA+   +  LP
Sbjct: 61   SSVALPLEKQFSTIPGLQTISSVNTQGVTSLTLEFVSSRDIDAAAVDVQAALLRAQRQLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
              +  +P+Y+K+NP+ AP++ ++L S  +   +L D A+ ++S +L+ + GV +V + G 
Sbjct: 121  QELTQLPSYRKVNPADAPVLFIALISPSMNPSELNDYAENLISPTLSTIDGVAQVGVYGR 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
               AVRI     LLN   ++LDE+  AV++AN   P+G ++   +   ++AN QL  A D
Sbjct: 181  KAFAVRIKANADLLNARGITLDELAKAVNSANANTPVGTLDGPRQTLTIQANRQLMKAAD 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQI 300
            +  +++ Q+NG+ +RL +VAT+ D  E+   +  FN Q ++ L V RQ  AN ++ VD +
Sbjct: 241  FAKLIVGQRNGSPVRLDEVATIEDSFESVKTASSFNGQDSISLAVQRQPNANTVQVVDAV 300

Query: 301  KAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASL 360
            +A +P  ++ LP SV++ +  DRS  I+  + + + TLL  + LV+LV++LFL  L A+L
Sbjct: 301  RALIPRFKAELPQSVEIQMVNDRSLSIREAVHDVQLTLLGTIALVVLVIFLFLHRLVATL 360

Query: 361  IPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPP 420
            IP+  +P+SL+G  A++Y  G+SL+N+SL+ + LA GLVVDDAIVVLENI R++E G  P
Sbjct: 361  IPAATIPISLIGAVALLYAFGYSLDNISLLGITLAVGLVVDDAIVVLENIMRYVEKGMDP 420

Query: 421  MKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLT 480
              AA  GA+EVGFT++S+++SLVAVF+ I FM G++  LF EF++ +A A++VS VVSLT
Sbjct: 421  FAAALRGAREVGFTIVSISISLVAVFIPIFFMPGVIGLLFHEFAVVVALAVLVSAVVSLT 480

Query: 481  LTPMLCARWLKPQQAEQ-------------TRLQRWSDTLHQRMVAAYDHSLGWALRHKR 527
            L PML +R LK    ++             T + R  +  ++ +  +Y  SL W L H+ 
Sbjct: 481  LVPMLASRLLKQVPRKEGAIDHEEEHPEPGTAIGRAFERGYRAVHGSYMRSLDWTLGHRN 540

Query: 528  LTLLSLLATIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALL 587
            + LL    T  +   L+  +PK   P++D GQ+       + +SFT M+   +    AL 
Sbjct: 541  VMLLMAGLTFVVTGWLFATIPKGFFPEEDIGQIQITTEAAEDISFTAMKALQDRVADALQ 600

Query: 588  ADPAVQSVAGF--IGGNSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFL 645
            ADP+V  V+ F  +GG + T N+  L  +      +    KV+E LR+   ++PG  +++
Sbjct: 601  ADPSVDYVSSFVGVGGPTATQNSGRLFAVLKARGERPAMGKVLESLRQRFREIPGIAVYM 660

Query: 646  MADQDLQLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGT 705
               Q+L+LGG    Q+ +++ YTLQS +   +  W  K++  +RA P    + +      
Sbjct: 661  QPVQNLRLGG---RQSKARFQYTLQSVNAGEMVPWATKLMERMRADPAFRDVTSDSQNRG 717

Query: 706  QQVTLVVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPS 765
             Q TL +DRD+A  LG+ +  +   L NAY  RQI +IY + N YQV+L           
Sbjct: 718  LQATLDIDRDKAGVLGVAVGDLRTALYNAYGDRQIGSIYGASNTYQVILSAADNDRQFEE 777

Query: 766  TLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQAMAAL 825
             + ++ V +  G  VPLS  +  + ++    V+H+GQ  +  ++F++        A A +
Sbjct: 778  DVARLSVRSNTGKLVPLSAFSTVKRTVGPTSVNHQGQLQAVTVSFNLGPDVPLGNATAKI 837

Query: 826  ERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTIL 885
            ++   +L +P+ +I   GG A  F  +Q  Q  +++ A+L++Y++LG+LYESYIHP+TIL
Sbjct: 838  DQFKDELKMPQSIITTYGGDAAVFQSSQSSQAVLLVLAVLVIYVLLGVLYESYIHPITIL 897

Query: 886  STLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEE 945
            + LPSA VGAL++L + G + +LI+ +G+ LLIG+VKKNAI++ID AL  +R +G SP +
Sbjct: 898  AGLPSAAVGALISLKIFGFDLTLIATIGILLLIGIVKKNAIMLIDFALDAQRTEGLSPVD 957

Query: 946  SIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTT 1005
            +IR AC LR RPILMTTLAA++GALPL L    GAE+RQPLG+ ++GGL+FSQ++TLY T
Sbjct: 958  AIREACRLRFRPILMTTLAALMGALPLALGLGAGAELRQPLGVAVVGGLIFSQVITLYIT 1017

Query: 1006 PVVYLYLDR 1014
            P +YL LDR
Sbjct: 1018 PAIYLALDR 1026