Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1038 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type) from Variovorax sp. SCN45

 Score =  853 bits (2204), Expect = 0.0
 Identities = 463/1034 (44%), Positives = 671/1034 (64%), Gaps = 29/1034 (2%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            M+ S PFI RPVAT LL +AI+L G V+F  LP++ LPQ+D+P I V     G SPEVM+
Sbjct: 1    MSPSRPFILRPVATSLLMVAIVLAGLVAFRFLPLSALPQVDYPTIQVQTLYPGGSPEVMS 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            +TV  PLER+ G ++G+  ++S+S  G + + + F LG+ +D A +EVQAAINA  +LLP
Sbjct: 61   NTVTAPLERQFGQMSGLDRMSSTSAAGVSIITLQFSLGQTLDVAEQEVQAAINAGGSLLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
            + + + P Y K+NP+ AP++ LS+TSD L   ++ +L +T L+Q ++QVSGVG V + G 
Sbjct: 121  ADLPAPPVYAKVNPADAPVLTLSITSDTLPLTEVQNLVNTRLAQKISQVSGVGLVSLSGG 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
              PAVRI    Q L    + LD +RTA++ AN     G  +  +R + + +NDQL +  D
Sbjct: 181  QRPAVRIQANTQALATNGIGLDTLRTAIAAANSNGAKGSFDGPKRAYTINSNDQLLTVDD 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQA--------AVLLVVNRQTGAN 292
            Y+ +++  +NG  +R+ DVA V +  EN   S +   +         A+++ V RQ GAN
Sbjct: 241  YKNLIVSYKNGAPIRMVDVAQVVNSAENTQLSAWAGSKTESGTKLIPAIIMNVQRQPGAN 300

Query: 293  IIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLF 352
            +I TVD IKAQLP LQ+ LP  + ++V  DR+  I+A+++  E  L++AVVLV+LV++ F
Sbjct: 301  VIATVDAIKAQLPELQAGLPTGLNISVLSDRTAGIRASVEHVEMELVLAVVLVVLVIFAF 360

Query: 353  LGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISR 412
            LGSLRA++I S+AVP+SL+GTF +MY+ G+SLNNLSLMAL +ATG VVDDAIV++ENI+R
Sbjct: 361  LGSLRATVIASIAVPISLIGTFGLMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENIAR 420

Query: 413  HIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAII 472
            +IE G+ P++AAF GA ++GFT++S+ VSL+AV + +LFMG +V  LF+EF++TLA  I+
Sbjct: 421  YIEEGEKPLQAAFKGATQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAVTLAITIL 480

Query: 473  VSLVVSLTLTPMLCARWLKPQQAEQT-------RLQRWSDTLHQRMVAAYDHSLGWALRH 525
            +S VVSLTL PM+ ARWLK +    T       R QR+ D +  R    YD SL W + H
Sbjct: 481  ISAVVSLTLVPMMSARWLKHEPKRDTGGSGFGARAQRFFDGVMVR----YDRSLHWVIDH 536

Query: 526  KRLTLLSLLATIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRA 585
            + LTLL  L T+ + + LY+ +PK L P QDTGQL   I+    +SF  M    +    A
Sbjct: 537  QPLTLLVALLTMVLTVVLYLTIPKGLFPTQDTGQLQARIQAAQDVSFDRMSQLQQEAAHA 596

Query: 586  LLADPAVQSVAGFIGGNSGTNNAF----VLVRLKPISERKIDAQKVIERLRKELPKVPGG 641
            +L DP V++++ F+G ++  N       +L+ LK   +   D QK+++RLR+ +  V G 
Sbjct: 597  ILEDPEVENLSSFVGVDAANNTMLHTGSMLINLK---KGHGDQQKIMDRLREHVHGVAGV 653

Query: 642  RLFLMADQDLQLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARD 701
             L+L   QDL +     +   ++Y  +L+  D AA+  W  K+VA L+   ++  + +  
Sbjct: 654  TLYLQPTQDLTIDA---ETGPTEYRVSLEGVDSAAITAWMKKLVARLQDSDKVRNVSSDA 710

Query: 702  GAGTQQVTLVVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYA 761
            GA      + V+RD A RL I    V   L +A+ QR +STI+   NQY+V+LE  P   
Sbjct: 711  GAQGLAAFVNVNRDTAARLSITASTVDDALYSAFGQRIVSTIFTETNQYRVILEAMPGMV 770

Query: 762  WDPSTLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQA 821
              P TL Q+ +I   G   PLS IA+     A  +++H  Q+ +  + FD A G S   +
Sbjct: 771  NTPQTLGQLSLIAGSGTATPLSAIANISEQQAPLQITHVAQYPASTLNFDTAPGVSLGSS 830

Query: 822  MAALERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHP 881
            + A+  A  ++GLP  +     G + A+ ++   Q ++IL A++ VY+VLG+LYESY+HP
Sbjct: 831  VDAIRAAAKEIGLPSSITMTFLGASGAYEKSLSNQLWLILAAVVCVYIVLGVLYESYVHP 890

Query: 882  LTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGF 941
            LTILSTLPSAGVGALLAL +TG +  +I ++G+ LLIG+VKKNAI+MID A+  ER+QG 
Sbjct: 891  LTILSTLPSAGVGALLALMITGNDLGVIGIIGIILLIGIVKKNAIMMIDFAIDAERNQGK 950

Query: 942  SPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILT 1001
            S  E+I +A LLR RPILMTTLAA+  A+PL+LS  +GAE+R+PLGL I GGL+ SQ+LT
Sbjct: 951  SAREAIHQAALLRFRPILMTTLAALFAAVPLMLSFGDGAELRRPLGLAIFGGLIVSQLLT 1010

Query: 1002 LYTTPVVYLYLDRL 1015
            L+TTPV+YL  DRL
Sbjct: 1011 LFTTPVIYLAFDRL 1024