Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1096 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtC (RND type) from Variovorax sp. SCN45

 Score =  933 bits (2412), Expect = 0.0
 Identities = 526/1087 (48%), Positives = 705/1087 (64%), Gaps = 73/1087 (6%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            MNLS PF+RRP+ T+LL++ + L G  +F +LPV+PLPQ+D+PVI VSA + GASPE MA
Sbjct: 1    MNLSLPFVRRPIGTVLLTIGVALAGIAAFFVLPVSPLPQVDYPVISVSAAIPGASPETMA 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            ++VATPLER LG+IAGV  +TS+S+ G++RV + F+L RDI+GAAREVQAAI+A+R  LP
Sbjct: 61   TSVATPLERHLGTIAGVNEMTSTSSVGTSRVTLQFDLSRDINGAAREVQAAISASRVDLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
            + +RS PTY+K NP+ +P+++L+LTS     GQ+YD    I+SQ L+QV GVG+V+IGG 
Sbjct: 121  ATLRSNPTYRKANPASSPVIILALTSKTKTPGQIYDAVSNIVSQRLSQVDGVGDVEIGGG 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
            SLPAVRI + P  L++Y +S D+VR A+  +N  RP G V+   R  Q+        A D
Sbjct: 181  SLPAVRIELLPFALSRYGISTDDVRAAIQASNANRPKGMVQGEGRKLQIYTQTPALRASD 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQI 300
            Y P+VI  +NG  +RL DVA V DGVE+    G FN + A+++++ RQ  ANIIETVD +
Sbjct: 241  YAPMVIAWRNGAAVRLQDVAEVLDGVEDTRTLGLFNGEPAIIVLITRQPSANIIETVDSV 300

Query: 301  KAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASL 360
            +A LP LQ+ LP  V L VA D +  I+ +L+E E TL+I+V+LV+LVV LFL S RA++
Sbjct: 301  RALLPELQAQLPPDVTLQVASDSTNSIRGSLREVEFTLVISVILVVLVVSLFLRSARATI 360

Query: 361  IPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPP 420
            +P++A   +L+GTF VMY+ GFSLNNLSLMAL +ATG VVDDAIVVLEN SRHIE+G   
Sbjct: 361  VPAVATVAALLGTFGVMYLLGFSLNNLSLMALTVATGFVVDDAIVVLENTSRHIESGMTR 420

Query: 421  MKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLT 480
            MKAA LGAKEVGFT+LS++VSLVAVF+ +LFMGG V  LF+EF++TL+AA+++SLV+SLT
Sbjct: 421  MKAALLGAKEVGFTVLSISVSLVAVFIPLLFMGGQVGRLFREFAVTLSAAVMISLVISLT 480

Query: 481  LTPMLCARWLKP-----QQAEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLA 535
             TPM+CA  LKP     +   Q R  R +   +  ++  Y++SL WAL  K L +L L+A
Sbjct: 481  TTPMMCAWMLKPGGEHDKNKPQGRFGRMAARSYDWVLKRYENSLDWALDSKGLVMLILVA 540

Query: 536  TIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQSV 595
             +G+N+ L+   PK   PQQD+GQL G +R D  +S   M  K+      + AD AV +V
Sbjct: 541  VVGLNVYLFSAAPKGFFPQQDSGQLNGGLRADQSISSKAMAAKLREVVDIIRADEAVDTV 600

Query: 596  AGFIGGNSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDLQLGG 655
             GF GG S     F+ V LKP S+RK     VI RLR +L  V G R+FL   QD++ GG
Sbjct: 601  VGFTGG-SRAGGGFMFVNLKPASQRKDSGLAVIARLRPKLNAVAGLRVFLGTVQDVRSGG 659

Query: 656  GGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLVVDRD 715
                 ++S Y YTL+S +LA LR W  K+   ++  P LT ID        +    VD++
Sbjct: 660  ---RSSNSTYQYTLKSDNLADLRTWASKLADEMKLQPVLTDIDTDQTENGVETMANVDKN 716

Query: 716  QAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQV--- 772
             A RLGI    V   L NA+ QRQ++TIY  LNQY VV+E  P+Y   P+ L  V V   
Sbjct: 717  TANRLGITSTAVDNALYNAFGQRQVATIYTELNQYHVVMEWAPRYTLSPNALSDVYVPAT 776

Query: 773  ------------------ITADGA------------------RVPLSTIAHYENSLANDR 796
                               TA+ A                   VP+S      N+ + + 
Sbjct: 777  KTTVVAGQAVTTQVAAPTTTANSALSASKTAAGSTAASSSSTAVPVSANPALRNASSGNV 836

Query: 797  VSHE----------GQFASEDIAFDVA---------------EGYSPDQAMAALERAVAK 831
            +S+            +F    +A  V+               EG +   A  A+ +A A 
Sbjct: 837  LSNTATSLVPLSAVAKFYENSVATSVSHQDGELATTVSFNLVEGANLGDAREAIAKAEAN 896

Query: 832  LGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSA 891
            + +P  V     GTA +  Q+Q  Q  +IL AL+++Y+VLGILYES +HP+T+LSTLPSA
Sbjct: 897  IAMPTNVRGAFAGTAASAQQSQSQQAMLILAALVVIYIVLGILYESLVHPITVLSTLPSA 956

Query: 892  GVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRAC 951
            GVGA+LAL +   EFS+I+L+G+FLLIG+VKKNAIL+ID AL+ ER +G SP E++R AC
Sbjct: 957  GVGAVLALLMFRMEFSIIALIGVFLLIGIVKKNAILIIDFALEAERSRGLSPLEAVREAC 1016

Query: 952  LLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLY 1011
            LLR RPILMTT+AA LGALPL +   EGAE+R+PLG+ IIGGL+ SQ+LTL TTPVVYL 
Sbjct: 1017 LLRFRPILMTTMAAALGALPLAIGFGEGAELRRPLGVAIIGGLIASQMLTLLTTPVVYLL 1076

Query: 1012 LDRLRHR 1018
            LD+LR R
Sbjct: 1077 LDKLRRR 1083