Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1056 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like from Variovorax sp. SCN45

 Score =  881 bits (2276), Expect = 0.0
 Identities = 473/1033 (45%), Positives = 674/1033 (65%), Gaps = 20/1033 (1%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            +++S  FI+RP+ T LL+LAI+L+G   F LLPVAPLPQ+DFP I VSA+L GASPE MA
Sbjct: 1    LSISATFIKRPIGTTLLALAILLVGAAVFPLLPVAPLPQVDFPTIQVSASLPGASPETMA 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            S VA PLER    IAG++ +TS+S  G+T++ + F+L R ID AA +VQAAINA+   LP
Sbjct: 61   SNVAQPLERNFSLIAGLSQMTSTSGLGNTQITLQFDLDRSIDAAALDVQAAINASTGQLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
            + + S PT++K+NP+ API++LS+ S  L   ++ D AD IL+Q ++Q+SGVG V IGG 
Sbjct: 121  ANLPSPPTFRKVNPADAPILILSVQSKTLPLTEVNDYADNILAQQISQISGVGLVNIGGV 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
              PAVR+ V+P  L    LSL++VRT +++A    P G ++   +++ V  NDQL  A+ 
Sbjct: 181  QKPAVRVQVDPAKLAALGLSLEDVRTVLASATVNAPKGTIDGPNQSFTVYTNDQLLKAQP 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAA------------VLLVVNRQ 288
            +  VV+  +NG  +R+ D+    DG EN   +G+    AA            ++L + +Q
Sbjct: 241  WNDVVLAYRNGAPIRVRDLGVAVDGPENSKIAGWAYAGAAAPAGSNVQNGRSIVLAITKQ 300

Query: 289  TGANIIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILV 348
             GAN+IETVD+I A LP L++ +P +V +N  +DR+  I+A++K+ E TLL+ + LV+ V
Sbjct: 301  PGANVIETVDRINAALPRLKASIPPTVDVNAIIDRTQTIRASVKDVEFTLLLTIALVVAV 360

Query: 349  VYLFLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLE 408
            +++FL ++ A+LIPS+ VP++L+GT  VMY+ G+SL+NLSLMAL +A G VVDDAIV+LE
Sbjct: 361  IFVFLRNVPATLIPSVTVPLALLGTVGVMYLLGYSLDNLSLMALTIAVGFVVDDAIVMLE 420

Query: 409  NISRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLA 468
            NI R++E G   M+AA+ GA E+GFT++S++VSLVAVF+ +L MGGIV  LF+EF++T+ 
Sbjct: 421  NIYRYVEEGMTAMEAAYKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480

Query: 469  AAIIVSLVVSLTLTPMLCARWLKPQQA-EQTRLQRWSDTLHQRMVAAYDHSLGWALRHKR 527
              I+VS+++SLTLTPMLC+R+LK +   +  RL +  +     M+  Y   L   L H+ 
Sbjct: 481  LTIVVSVIISLTLTPMLCSRFLKNEHGNKHGRLYQLFERGFDAMLNGYKRGLHVVLDHQF 540

Query: 528  LTLLSLLATIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALL 587
            +TL+  +AT+     L+ V+PK   PQQDTG + GF       SF  M  +M      + 
Sbjct: 541  ITLMVFIATVAATGVLFAVIPKGFFPQQDTGFISGFAESAQDASFASMNARMIQLADVVR 600

Query: 588  ADPAVQSVAGFIGGNSGTNNAFVLVRLKPISE-RKIDAQKVIERLRKELPKVPGGRLFLM 646
             DP V    G  G +S  N     + LKP  E R   A ++I RLR +L KV G  LFL 
Sbjct: 601  KDPDVTGF-GMNGSSSTYNTGNFYISLKPKDEGRTATADEIITRLRPQLAKVQGVNLFLQ 659

Query: 647  ADQDLQLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQ 706
            A QD+++GG     + +QY YT+   DL  L  W PK++A  + LPELT +         
Sbjct: 660  AGQDIRVGGRA---SRTQYQYTVTDADLDELNTWAPKLLARFKQLPELTDLATDQQNAAA 716

Query: 707  QVTLVVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPST 766
               L +DRD+A   GI    + A L +A  QRQ++  +  LN Y VVLE+ P    DP+ 
Sbjct: 717  SAVLTIDRDRASSFGISPATIDATLYDAIGQRQVAQYFTQLNSYHVVLEVTPGVQQDPAL 776

Query: 767  LEQVQVIT-ADGARVPLSTIAHYENS-LANDRVSHEGQFASEDIAFDVAEGYSPDQAMAA 824
              ++ + +   G +VPLST    + S  A   +SH+GQF +  I+F++A G +   A+ A
Sbjct: 777  FSKLYLSSPITGQQVPLSTFVKVDTSKTAYLSISHQGQFPAVTISFNLAPGVALGDAVNA 836

Query: 825  LERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTI 884
            + +A A++GLP+ +     GTA AF  +   QP++I  AL+ VY+VLG+LYESYIHPLTI
Sbjct: 837  INKAQAEMGLPQSLTGSFQGTAQAFQDSLATQPYLIAAALVAVYIVLGLLYESYIHPLTI 896

Query: 885  LSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPE 944
            LSTLPSAGVGALL L   G + S+I+L+G+ LLIG+VKKN I+MID AL+ ER QG SP 
Sbjct: 897  LSTLPSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALKAEREQGMSPH 956

Query: 945  ESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYT 1004
            ++I +ACLLR RPI+MTT+ A+L  LPL+L    G+E+R+PLG  ++GGL+ SQ LTL+T
Sbjct: 957  DAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGSGSELRRPLGYAMVGGLILSQALTLFT 1016

Query: 1005 TPVVYLYLDRLRH 1017
            TPVVYLYLDR  +
Sbjct: 1017 TPVVYLYLDRAHY 1029