Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1034 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

 Score =  510 bits (1314), Expect = e-148
 Identities = 320/1019 (31%), Positives = 541/1019 (53%), Gaps = 24/1019 (2%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            M LS   +RRPV + ++++ + ++G V +  L V   P  D P++ V    +GA+  V+ 
Sbjct: 1    MQLSDLSVRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVE 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            + +   +E  +  + G+ T+TS+S  G++ + I F+  RDID AA +V+  + +    LP
Sbjct: 61   TRITQQIEDAVAGVQGIQTITSTSQDGTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
                + P  +K++     I+ L+ +       Q+ D  D  ++   A + GV  V IGG 
Sbjct: 121  EDALA-PEIRKVDSDARSILFLAFSRPGWSPIQISDYLDRNIADRFAAIDGVARVTIGGE 179

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
            + P+ RI    + L  + L+  +V  A+   N   P G  E  ++N  +R      +   
Sbjct: 180  ARPSTRIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRFESKDQNQTLRVERPFATPDQ 239

Query: 241  YEPVVI-RQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQ 299
            +  +V+ R ++G  ++L DVA + +G EN Y+S   N   A+ + + RQ+GAN +E   +
Sbjct: 240  FAQLVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGTAIGIGIIRQSGANTLEVAQK 299

Query: 300  IKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRAS 359
             KA +  L+  LP  +++ +  D S  I+  +     TL+ A +LVILV++LFLGS+RA+
Sbjct: 300  AKALIKELEPTLPKGMKVAIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFLGSVRAT 359

Query: 360  LIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQP 419
            ++P++ VP+ L+ T AVM++ G S+N L+L+A +LA GLVVDDAIVVLEN+   +E G  
Sbjct: 360  IVPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHRVEQGDD 419

Query: 420  PMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSL 479
            P+ AA+LG ++VGF ++S  + + AVFV ++F+ G    LF+E +I + AAI  S  +SL
Sbjct: 420  PLVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIGFSGFISL 479

Query: 480  TLTPMLCARWLKPQQAEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLATIGI 539
            +L PMLC++ LK   AE+ RL RW D   QR+   Y   L W L+   + LL +   +G+
Sbjct: 480  SLAPMLCSKLLK--NAERGRLARWVDDRFQRIEHGYGRWLDWTLKKPLMPLLGVAIFLGV 537

Query: 540  NIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKME--------IYRRALLADPA 591
               L+  +P  L P +DTG +   +   +G  F  M   M+        + +   L +  
Sbjct: 538  AFFLFTRLPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDLAFLRKDGTLQNLV 597

Query: 592  VQSVAGFIGGNSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDL 651
            +++  GF G     NN  V+  L+P  +R I   +V   + K +   PG R        L
Sbjct: 598  IRTPGGF-GTTDDYNNGNVIAFLRPWEDRTITTAEVATIINKVIADQPGVRGNAAPRSGL 656

Query: 652  QLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLV 711
               G GR    +  L       L A R+   +++ A  + P L  +D+       Q+ + 
Sbjct: 657  ---GRGRGLPVNIVLAGSTYEGLVAARD---RIMLAAASYPGLINLDSDYKETKPQMRIE 710

Query: 712  VDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQ 771
             D  +A  LG+ ++ V+  L +    R+++T  D   +Y+V+++         + LE++Q
Sbjct: 711  TDLQRAGDLGVSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAERDGRQTLADLERIQ 770

Query: 772  VITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVAK 831
            V +  G  VPLS +          +++   +  +  +   +A G S  Q +A LE    +
Sbjct: 771  VRSRRGVLVPLSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSLGQGLAFLEDQARQ 830

Query: 832  LGLPEEVIAKLGGTADAFAQTQQGQPFMILG-ALLLVYLVLGILYESYIHPLTILSTLPS 890
               PE +     G + +  +T  G  +++ G  +L+VYL+L   +ES+IHP  I++T+P 
Sbjct: 831  --SPEVLAIGYRGESQSLRET-GGSIWIVFGLTILIVYLLLAAQFESFIHPGVIIATVPL 887

Query: 891  AGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRA 950
            A  G  L L +TGG  +L S +G+ +L+G+  KN IL+++ A QL R +G    E+IR A
Sbjct: 888  AVAGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEFANQL-RDEGMEIAEAIREA 946

Query: 951  CLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVY 1009
               RLRPILMT++A ++GA+PL+L    GA  R  +G+ I+ G+  + ++TL+  P+ Y
Sbjct: 947  AKRRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLATLITLFLIPIFY 1005



 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 69/323 (21%), Positives = 139/323 (43%), Gaps = 17/323 (5%)

Query: 183  PAVRIAVEPQLLNQYNLSLDEVRTAVSNA-NQRRPMGFVEDAE--RNWQVRANDQLESAK 239
            P +RI  + Q      +S+++V  A+ +    RR   +V+  E  R       D  ++  
Sbjct: 705  PQMRIETDLQRAGDLGVSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAERDGRQTLA 764

Query: 240  DYEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQ 299
            D E + +R + G ++ LS V TV + V        +N   A+ L      G ++ + +  
Sbjct: 765  DLERIQVRSRRGVLVPLSAVVTVRE-VAGPRQLNRYNKLRAITLTAALAPGTSLGQGLAF 823

Query: 300  IKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRAS 359
            ++ Q      +L    +             +L+E   ++ I   L IL+VYL L +   S
Sbjct: 824  LEDQARQSPEVLAIGYRGE---------SQSLRETGGSIWIVFGLTILIVYLLLAAQFES 874

Query: 360  LI-PSL---AVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIE 415
             I P +    VP+++ G    + + G S+N  S + +++  GL   + I+++E  ++  +
Sbjct: 875  FIHPGVIIATVPLAVAGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEFANQLRD 934

Query: 416  NGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSL 475
             G    +A    AK     +L  +++ V   V ++  GG          + +   + ++ 
Sbjct: 935  EGMEIAEAIREAAKRRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLAT 994

Query: 476  VVSLTLTPMLCARWLKPQQAEQT 498
            +++L L P+  +R  K   + QT
Sbjct: 995  LITLFLIPIFYSRVAKRTVSPQT 1017