Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1046 a.a., MdtB/MuxB family multidrug efflux RND transporter permease subunit from Dickeya dadantii 3937

 Score =  867 bits (2239), Expect = 0.0
 Identities = 462/1019 (45%), Positives = 665/1019 (65%), Gaps = 7/1019 (0%)

Query: 7    FIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMASTVATP 66
            FI RP+AT LL +AI+L G V +  LPV+ LP++D+P I V     GASP+VM S V  P
Sbjct: 22   FILRPIATTLLMIAILLAGIVGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAP 81

Query: 67   LERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLPSGMRSM 126
            LE + GS++G+  ++S S+ GS+ + + F+L   +D A ++VQAAINA  NLLP  +   
Sbjct: 82   LEHQFGSMSGLKQMSSQSSGGSSVITLQFQLTLPLDVAEQDVQAAINAATNLLPGDLPFP 141

Query: 127  PTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGSSLPAVR 186
            PTY K+NP+  PIM L++TS  L   Q+ D+ +T ++Q +AQV GVG V + G   P+VR
Sbjct: 142  PTYSKVNPADPPIMTLAVTSTALPLTQVQDMIETRIAQKIAQVEGVGLVTLAGGQRPSVR 201

Query: 187  IAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKDYEPVVI 246
            + + P  L  Y LS + VRTA++ AN   P G  +   R   + ANDQ+ S  DY  ++I
Sbjct: 202  VKLNPGALAAYGLSSETVRTAITAANVNTPKGSFDGPARAVTLSANDQMRSLDDYRQLII 261

Query: 247  RQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQIKAQLPA 306
              +N   +RL DVATV    EN Y + + N   A++L + RQ GAN+I T D I++ LP 
Sbjct: 262  TWKNNAPVRLQDVATVEQAAENTYLAAWANQNQAIVLNIQRQPGANVIATADHIRSLLPT 321

Query: 307  LQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASLIPSLAV 366
            L++ LP SV + +  DR+  I+A++ + +  L++A+ LV++V+YLFL +  A+LIPS+AV
Sbjct: 322  LKASLPKSVDVALLTDRTTTIRASVDDVQFELILAIALVVMVIYLFLRNAVATLIPSIAV 381

Query: 367  PVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPPMKAAFL 426
            P+SLVGTFA MY  GFS+NNL+LMAL +ATG VVDDAIVV+ENI+R+IE G+ P++AA  
Sbjct: 382  PLSLVGTFAAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENIARYIEKGEKPLQAALK 441

Query: 427  GAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLC 486
            GA E+GFT++S+  SL+AV + +LFMG I+  LF+EF++TLA +I++S VVSLTLTPM+C
Sbjct: 442  GAGEIGFTIISLTFSLIAVLIPLLFMGDIIGRLFREFAVTLAVSILISAVVSLTLTPMMC 501

Query: 487  ARWLKPQQ-AEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLATIGINIALYV 545
            AR L     ++Q R  R S+     ++A Y   L   L H  +TL   L+T+ + I LY+
Sbjct: 502  ARLLSHHSLSQQNRFTRASEKFFDWVIAWYGRGLTRVLSHPWITLSVALSTLVLTILLYI 561

Query: 546  VVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQSVAGFI---GGN 602
            V+PK   P QD G + G ++    +SFT M  K +     ++ DPAV+SV+ FI   G N
Sbjct: 562  VIPKGFFPIQDNGIIQGTVQASQTISFTGMVDKQQQVTSLIMQDPAVESVSSFIGVDGTN 621

Query: 603  SGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDLQLGGGGRDQTS 662
               N+  + + LKP+ ER    Q VIERL++    +PG +L+L   QDL +       + 
Sbjct: 622  PSLNSGRLQINLKPLDERSDRIQGVIERLQQRTSALPGVQLYLQPVQDLTI---DTQVSR 678

Query: 663  SQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLVVDRDQAKRLGI 722
            +QY +TLQ+  LA L  W PK+ A L+ LP+L  + +          L V+RD A RLGI
Sbjct: 679  TQYQFTLQTMSLAELSTWVPKLTAELQKLPQLQDVSSDWQDSGAVAYLKVNRDSASRLGI 738

Query: 723  DMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQVITADGARVPL 782
             M  V + L NA+ QR ISTIY   NQY+VVLE     +   + L+ +++I + G  VPL
Sbjct: 739  TMSQVDSALYNAFGQRLISTIYTQSNQYRVVLEQRHDSSNGLAALDDIRLINSSGGVVPL 798

Query: 783  STIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVAKLGLPEEVIAKL 842
            S+IA  E       ++H  QF S  I+F+VA GY+   A+ A++    ++ LP ++I + 
Sbjct: 799  SSIASVEERQGPLSINHIDQFPSTTISFNVAPGYALGDAVKAIQETQQQMQLPSDIITRF 858

Query: 843  GGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAGVGALLALYVT 902
             G+  AF        ++++ A++ +Y+VLG+LYES+IHP+TILSTLP+AGVGALLAL + 
Sbjct: 859  QGSTLAFQSALTSTIWLVIAAVVAMYIVLGVLYESFIHPVTILSTLPTAGVGALLALMIA 918

Query: 903  GGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRACLLRLRPILMTT 962
            G + ++I+++G+ LLIG+VKKNAI+MID AL  ER QG +P ++I +ACLLR RPILMTT
Sbjct: 919  GSDLNIIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMTPYQAIYQACLLRFRPILMTT 978

Query: 963  LAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLYLDRLRHRFNR 1021
            +AA+L A+PL+ S   GAE+R+PLG+ ++GGLV SQ+LTL+TTPV+YL  DRL  R  R
Sbjct: 979  MAALLSAVPLMFSTGVGAELRRPLGICMVGGLVMSQVLTLFTTPVIYLLFDRLALRLRR 1037