Pairwise Alignments

Query, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1047 a.a., Multidrug resistance protein MdtB from Azospirillum sp. SherDot2

 Score =  927 bits (2395), Expect = 0.0
 Identities = 479/1026 (46%), Positives = 695/1026 (67%), Gaps = 7/1026 (0%)

Query: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60
            MN+S PFI RPVAT LL LA++LLG + +  LP++ LP +DFP + V+  L GA+P+VMA
Sbjct: 1    MNISAPFILRPVATGLLMLAVVLLGLLGYSTLPISSLPTVDFPTVRVTTQLPGAAPDVMA 60

Query: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120
            S+V  PLER+LG IAG++++ S+S+ G + + + F+L RDID A+++VQ+AI+A    LP
Sbjct: 61   SSVTAPLERQLGQIAGISSMVSTSSFGLSVITLQFDLTRDIDAASQDVQSAISAASGTLP 120

Query: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180
             G+ + P Y K+NP+  P+MVL+L+S+ L+   + D ADT+L+Q L+QV GVG V I G 
Sbjct: 121  KGLPNPPVYDKVNPADTPVMVLALSSESLRLETVSDAADTLLAQKLSQVDGVGYVGIEGG 180

Query: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240
              PAVR+ V P  +    L+L++VR  ++ AN   P G  +   ++W +  NDQ+E+A  
Sbjct: 181  LRPAVRVQVNPAAVAGLGLTLEDVRNTITQANVNAPKGSFDGPRQSWSIGVNDQIENAAA 240

Query: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQI 300
            Y P+++  +NG  +RL+D+ TV D VEN   + + + + AVLL V RQ GANII+TVD+I
Sbjct: 241  YRPIIVAYKNGGPVRLTDIGTVVDSVENTRLAAWHDGKPAVLLNVLRQPGANIIDTVDRI 300

Query: 301  KAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASL 360
               LP+LQ+ LP  + + V  DR+  I+A++ + + TL++   LV+LV++LFL    A++
Sbjct: 301  HKLLPSLQASLPPQIHMAVLTDRTETIRASVVDVQKTLVLTAGLVVLVIFLFLRKAWATV 360

Query: 361  IPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPP 420
            IP+ A+P+SL+GTF +M +CGFSL+NLSLMAL +A+G VVDDAIV++ENI R+IE G+ P
Sbjct: 361  IPAAALPLSLIGTFGIMALCGFSLDNLSLMALTIASGFVVDDAIVMIENIVRYIEKGEKP 420

Query: 421  MKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLT 480
            ++AA  GA+++GFT++S+ +SL+AVF+ +LFMGG+V  LF+EF+ITL+ A++VS V+SLT
Sbjct: 421  LQAALKGARQIGFTVVSLTLSLIAVFIPLLFMGGVVGRLFREFAITLSIAVLVSAVISLT 480

Query: 481  LTPMLCARWLKPQ-QAEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLATIGI 539
            LTPM+CAR LK + + +   L RW++     ++  Y  SL + LRH+  TL+  +AT+  
Sbjct: 481  LTPMMCARLLKAEAETKPNGLFRWTERGFDALLNGYAASLRFVLRHQPATLVFTIATLAA 540

Query: 540  NIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQSVAGFI 599
             + LY VVPK  +PQQDTG ++G       +S   M  +       +  DP V  VA F+
Sbjct: 541  TLYLYDVVPKGFLPQQDTGVIIGVTDAAPSISVKAMAERQREVADIVRRDPDVAGVASFV 600

Query: 600  GG---NSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDLQLGGG 656
            G    N+ TN   + + LKP  +R   A+++I RLR     + G  LF+ A QD+Q+   
Sbjct: 601  GTGTVNATTNTGNLTIALKPRDQRSASAEEIIARLRAATGDLKGVSLFMQAVQDVQIDS- 659

Query: 657  GRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLVVDRDQ 716
                + +QY Y LQ  D   L  W P+++ +LRA PELT +         QV L +DRD 
Sbjct: 660  --RVSRTQYQYVLQDADPRELESWTPRLLESLRARPELTDVATDQQPDGLQVYLTIDRDA 717

Query: 717  AKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQVITAD 776
            A RL +    +   L +A+ QRQ+STIY   NQY+V+LE+ P +  DP++L ++ V  + 
Sbjct: 718  ASRLHVLPQAIDDTLYDAFGQRQVSTIYTQTNQYRVILEVEPSFQMDPASLSKIYVKASG 777

Query: 777  GARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVAKLGLPE 836
            G  VPL+ I   E   A   ++H+GQF S  ++F+VA G S   A+AA+++A   +G+P+
Sbjct: 778  GTVVPLNAIVSVERKTAPLVITHQGQFPSVTLSFNVAHGVSLGAAVAAIQQARDSIGMPD 837

Query: 837  EVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAGVGAL 896
               A+  GTA  F  +   QP++IL A++ VY+VLG+LYES IHP+TILSTLPSAG+GAL
Sbjct: 838  TATARFAGTAAEFRASLDTQPWLILAAVVAVYIVLGVLYESTIHPITILSTLPSAGIGAL 897

Query: 897  LALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRACLLRLR 956
            LAL  TG + SLI+L+G+ LLIG+VKKNAI+MID AL+ ER+QG +PE SI  A LLR R
Sbjct: 898  LALMATGHDLSLIALVGIVLLIGIVKKNAIMMIDFALEAERNQGMAPERSIYEASLLRFR 957

Query: 957  PILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLYLDRLR 1016
            PI+MTT+AA+LGALPL L    G+E+R+P+G+ I+GGL+FSQ+LTLYTTPVVYLY+DRL 
Sbjct: 958  PIMMTTMAALLGALPLALENGTGSELRRPMGIAIVGGLLFSQVLTLYTTPVVYLYMDRLG 1017

Query: 1017 HRFNRW 1022
             R  RW
Sbjct: 1018 SRLGRW 1023