Pairwise Alignments

Query, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

Subject, 472 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  310 bits (794), Expect = 7e-89
 Identities = 179/465 (38%), Positives = 265/465 (56%), Gaps = 5/465 (1%)

Query: 26  AGLCVALLSACTLSPDYHRPELNSTAAQFKHAEG--WTQASPSDAIARGAWWEIYGDAGL 83
           A L +  L  C+++P Y  P ++  A   +      W  A PSD +A   WW +Y D+ L
Sbjct: 9   AALMLLALQGCSMAPTYQVPAVDLPAGYREQTSDGPWHSAQPSDQLAP-EWWTLYNDSRL 67

Query: 84  NALVEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLSTSKNRSAQGTGSSSSSLS 143
           N L ++L ++N  +A + A +  +QA      A LFP +  S    R  Q    S     
Sbjct: 68  NDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQS--DSRPLRG 125

Query: 144 NNSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFADLASIRLSQQSELVQNYL 203
           +    + N+  A   +S+++DLWGK+R  + A +A A+AS  DLA  RLS Q +L   Y+
Sbjct: 126 DTQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQHQLATLYV 185

Query: 204 QLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKSTQADLIDLIWQ 263
           QL  +D Q R+L+ ++  + ++L++  ++Y   +A    + +A+ QL   +A   ++  Q
Sbjct: 186 QLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKAQWDEIRGQ 245

Query: 264 RAQFENAIAVLLGKAPADFALADSKAIPALPQIPVSLPSQLLERRPDIAAAERNVMAANA 323
           R   E+AI  L+G A +DF+L+ S  + +LP IP  LPS LL+RRPDIAAAER V AANA
Sbjct: 246 RNLTEHAIGELVGVAASDFSLSPSPQLISLPGIPSQLPSHLLQRRPDIAAAERRVFAANA 305

Query: 324 NIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAGKRSAEVDRT 383
           NIGV++AA++PD SL+   G  +    N +   NRYW++GP + L +FD G+ SA   + 
Sbjct: 306 NIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVNLPIFDGGRLSANERQA 365

Query: 384 VAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEALDAARESLRLTENQYRAG 443
            A +++  A YR  VL   REVE+ L QL+    EA   Q A DAA+ +  L  N Y+AG
Sbjct: 366 KAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQAAADAAQHTQSLAMNSYQAG 425

Query: 444 LIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGWDA 488
            + YLDVV  QT AL  +R++  +   +L ASV LV ALGGGW A
Sbjct: 426 AVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGWHA 470