Pairwise Alignments

Query, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

Subject, 481 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  220 bits (561), Expect = 8e-62
 Identities = 136/468 (29%), Positives = 247/468 (52%), Gaps = 11/468 (2%)

Query: 28  LCVALLSACTLSPDYHRPELNSTAAQFKHAEGWTQASPS-DAIARGAWWEIYGDAGLNAL 86
           L +  LSACT+ PD+ RP+      Q+   +G   AS + +   +  WW+++ D  L+AL
Sbjct: 9   LSLISLSACTVGPDFQRPQ-GPQVTQWSEPQGRQAASRAVNDPLQERWWDVFHDEQLSAL 67

Query: 87  VEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLSTSKNRSAQGTGSSSSSLSNNS 146
                  N  +  + ++ +Q++A+ + + A  +P+++ +    R        S    NN 
Sbjct: 68  TRRALTDNLDLKLASSRLQQSRAVRQVTTAERYPNVNANGDYQRKRNSGKGLSDPSGNNG 127

Query: 147 SGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFADLASIRLSQQSELVQNYLQLR 206
               N ++     SWE+D WG+++    A +A+ + +  D  ++ LS  +E  QNY+QLR
Sbjct: 128 RSAFNQWDMGFSASWELDFWGRVKRETEAADATLQVAENDRRAVLLSVLAETAQNYIQLR 187

Query: 207 VIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKSTQADLIDLIWQRAQ 266
            +   + + E  +     SL++++ +   GVA    VA+A  Q+ + +A L DL  ++ Q
Sbjct: 188 GVQNTRAVTEQNLDVARHSLKLSQLRLADGVATDLDVAEAAAQVAAIEARLPDLQQRQDQ 247

Query: 267 FENAIAVLLGKAPADF--ALADSKAIPALP-QIPVSLPSQLLERRPDIAAAERNVMAANA 323
             NA+++L+G+ P      L+   A+P    Q+ + LPS+L ERRPDI  AE  + AA A
Sbjct: 248 LINALSLLMGEPPQALHAQLSKDAAVPQTQRQVAIGLPSELAERRPDIRQAEARLHAATA 307

Query: 324 NIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAGKRSAEVDRT 383
           +IGV++  ++P ++LS S G  +   S++    +R ++ GPQ +L LF+ G+    ++  
Sbjct: 308 SIGVAKGDFYPRITLSGSLGSQAMQLSDFGSWGSRAFAFGPQFSLPLFNGGRLQGMLNLR 367

Query: 384 VAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEALDAARE---SLRLTENQY 440
            A   +    Y+QTVL  + E+++   QL  Y    + R    +A R+   +LR  + QY
Sbjct: 368 EAQQQEAALAYQQTVLRAWHEIDD---QLTRYNASQLRRDSLAEAVRQNQIALRTAQQQY 424

Query: 441 RAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGWDA 488
             G++ +++V+ VQ+  L+ +   ++   G  +A V L  ALGGGW++
Sbjct: 425 VEGVVDFVNVLTVQSALLATQEQWVDSSTGVSLAMVGLYKALGGGWES 472