Pairwise Alignments

Query, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

Subject, 497 a.a., Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system from Variovorax sp. SCN45

 Score =  370 bits (949), Expect = e-107
 Identities = 206/474 (43%), Positives = 291/474 (61%), Gaps = 13/474 (2%)

Query: 17  RGRGSRLLGAGLCVALLSACTLSPDYHRP--ELNSTAAQFKHAEGWTQASPSDAIARGAW 74
           R  G   L A    ALL+ C++ P YH+P   L +   + K AEGW  A+P+DA+ RG W
Sbjct: 11  RAPGRLSLSALALAALLAGCSVGPLYHQPVTALPNNWKEQKAAEGWLPAAPADALDRGEW 70

Query: 75  WEIYGDAGLNALVEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLSTSKNRSAQG 134
           W+++GD  L+ L   +  SNQ +A + A Y  AQALVR  RAALFP + L+ S  RS   
Sbjct: 71  WKLFGDPTLDELASRVQVSNQNIAAAVANYANAQALVRGQRAALFPQVSLNGSGKRS--D 128

Query: 135 TGSSSSSLSNNSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFADLASIRLSQ 194
           TGS+S S         N + A L  +W  D+WG+LRE++N+  A+A+AS ADLAS RLS 
Sbjct: 129 TGSTSPS---------NAFAATLDATWAPDVWGRLRESVNSASANAQASEADLASARLSA 179

Query: 195 QSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKSTQ 254
              +  NYL LR  D +  LL+ T+  YER+  +  N+Y+A +A    V QA++QL + +
Sbjct: 180 IGTMATNYLSLREADVEIGLLDQTIEGYERAYTITSNRYKAAIAAQSDVLQAQSQLATAR 239

Query: 255 ADLIDLIWQRAQFENAIAVLLGKAPADFALADSKAIPALPQIPVSLPSQLLERRPDIAAA 314
           A  + L+  RA FE+AIAVL+G  PADF+L  +     +P IP  +PS LL+RRPDIAAA
Sbjct: 240 ATRLTLVRNRATFEHAIAVLVGAVPADFSLPPAAWKQTVPGIPTGVPSTLLQRRPDIAAA 299

Query: 315 ERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAG 374
           ER+V +AN+ IG++R+AYFP  +L+ + G S+S   +    PN  WS+G   A  +FDAG
Sbjct: 300 ERSVASANSQIGIARSAYFPSFNLNAAIGSSASRVGDLFSAPNSLWSLGLSAAQVVFDAG 359

Query: 375 KRSAEVDRTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEALDAARESLR 434
             SA VD   A YD +VA+YRQTVL  F+ VE+ L        +  + +EA +AA ++ +
Sbjct: 360 AISASVDAAKASYDASVARYRQTVLAAFQGVEDQLTAGATLAQQEGMYREASEAADKTEQ 419

Query: 435 LTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGWDA 488
           +  NQYR+ L+ Y DVV  Q  AL+  R+++ +   R +A+V L+ ALGGGW A
Sbjct: 420 ILLNQYRSALVAYTDVVTAQVAALNARRTLVQVQLNRQIAAVSLIQALGGGWQA 473