Pairwise Alignments

Query, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

Subject, 497 a.a., Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system from Variovorax sp. SCN45

 Score =  384 bits (986), Expect = e-111
 Identities = 218/483 (45%), Positives = 303/483 (62%), Gaps = 26/483 (5%)

Query: 28  LCVALLSACTLSPDYHRPELNSTAAQFKHAEG-WTQASPSDAIARGAWWEIYGDAGLNAL 86
           L V LL+ C + PDY RP++   AA FK   G W  A+P    A   WW+ YGD+ L  L
Sbjct: 16  LAVLLLAGCAVGPDYVRPQMEVPAA-FKETGGPWKTAAPQTIDADHPWWDAYGDSTLGDL 74

Query: 87  VEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLSTSKNRSAQGTGSSSSSLSNNS 146
           + + N +NQ +  +EAQYRQAQA+  ++RA  FP++ ++     + +G  +S+ ++    
Sbjct: 75  MAKANAANQNIRVAEAQYRQAQAITAAARANFFPTVGVNAG---AVRGQSNSTGTVK--- 128

Query: 147 SGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFADLASIRLSQQSELVQNYLQLR 206
             +  T    L  SWE DLWG +R ++ A  AS +AS  DLA  RLS Q+ L Q+YLQ+R
Sbjct: 129 --LGTTDTLGLSASWEPDLWGAVRRSVEAGTASEQASADDLAGARLSIQTTLAQDYLQIR 186

Query: 207 VIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKSTQADLIDLIWQRAQ 266
           VID ++ L  +T  AY ++L + ++QY AG      VA A +QLK+ QA  +DL  QRAQ
Sbjct: 187 VIDLERDLYASTTTAYAKALELTQHQYAAGTVLRSDVALAESQLKTAQAQAVDLDAQRAQ 246

Query: 267 FENAIAVLLGKAPADFALA--DSKAIPALP-----------QIPVS---LPSQLLERRPD 310
            E+AIAVL G+APA F+L   +S   P  P           Q+PVS   LPS+LLERRPD
Sbjct: 247 LEHAIAVLTGQAPASFSLPPLESSGQPQTPESLSLASALHVQLPVSPAGLPSELLERRPD 306

Query: 311 IAAAERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTL 370
           IA AER V AANANIGV++AAY+P + LS SGG+S++S +     P+R WS+G  LA T+
Sbjct: 307 IAGAERRVQAANANIGVAKAAYYPQIMLSASGGFSAASLATLFNTPSRVWSLGAALAQTV 366

Query: 371 FDAGKRSAEVDRTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEALDAAR 430
           FD G R A  D+ VA YD +VAQY+QTVL GF++VE+ L  L+V   E+ ++ +A+ A++
Sbjct: 367 FDGGLRKAHTDQAVAAYDASVAQYKQTVLGGFQQVEDNLATLRVLDGESTLQADAVRASQ 426

Query: 431 ESLRLTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGWDAEQ 490
            + RL   QYRAG   YL VV  QT +L+N+R+   +L  +L ASV L++A GGGW+A  
Sbjct: 427 LAERLALAQYRAGTATYLSVVTAQTLSLTNQRTAAQVLGRQLAASVSLISATGGGWNAAD 486

Query: 491 AFA 493
           A A
Sbjct: 487 AVA 489