Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  149 bits (377), Expect = 2e-41
 Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%)

Query: 14  ALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLL 73
           ALYR+HRGWL AWLRR +     A DLSQDTF+R+L   +  A  REPRA+L+ + K LL
Sbjct: 14  ALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELRAP-REPRAFLMAIAKGLL 72

Query: 74  SNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRKAFLWSQ 133
            ++ +R +LEQAYL  L  +PE   PSPE++ ++LE L+A+D LL  L    R AFL+++
Sbjct: 73  FDYFRRAALEQAYLTELMLIPESEHPSPEEQHLILEDLKAIDRLLGKLSSKARAAFLYNR 132

Query: 134 LEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLA 167
           L+G+G+AEI QRLGV    V++Y+AQ    C +A
Sbjct: 133 LDGIGHAEIAQRLGVSVPRVRQYLAQGIRQCYIA 166