Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 70.1 bits (170), Expect = 2e-17
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 6/150 (4%)

Query: 16  YREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLSN 75
           YRE    L  +L  ++GN   A D+  D ++R+L  +     I +PRA+L      L+ +
Sbjct: 6   YRE----LVCFLNAKLGNRQVAEDVVHDAYVRVLERSSD-TPIEQPRAFLYRTALNLVID 60

Query: 76  FHQRRSLEQAY-LDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRKAFLWSQL 134
            H+R +L Q   LD L         SP       + L+ L+  L  L PA R +FL  +L
Sbjct: 61  GHRRNALRQVEPLDVLDAEERFASSSPHTHHDHGQRLELLERALAELPPACRDSFLLRKL 120

Query: 135 EGLGYAEIGQRLGVCQRSVKRYMAQAYEHC 164
           EGL + +I +RL + +  V++++  A +HC
Sbjct: 121 EGLTHLQIAERLSISRAMVEKHIVNAMKHC 150